LMTOY>> seq_pipeline: 2-feb-2022
LMTOY>> READING lmtoy_functions 24-dec-2021 via /lma1/teuben/lmtoy/examples/seq_pipeline.sh
Working directory ./2018-S1-MU-45/84475
LMTOY>> Hang on, creating a bootstrap lmtoy_84475.rc from path=/n/lma1/lmt/data_lmt/
#
# version=2-feb-2022
# ifproc="/n/lma1/lmt/data_lmt//ifproc/ifproc_2019-05-30_084475_01_0000.nc"
date_obs="2019-05-30T06:38:25"
# skytime=3947.26 sec
# inttime=1396.92 sec
obsnum="84475"
calobsnum="84474"
obspgm="Map"
obsgoal="Science"
ProjectId="2018-S1-MU-45"
# SkyOff=0 0
# HPBW=14 arcsec
# XYLength=180 180 arcsec
# XYRamp=0 0 arcsec
# XYoff=0 0 arcsec
# XYstep=0.85 0.3
numbands=1
vlsr=2.6 # km/s
skyfreq=95.96046941201965 # GHz
restfreq=95.955 # Ghz
src="L1157-B1"
resolution=13 # arcsec
cell=6.5 # arcsec
x_extent=180 # arcsec
y_extent=180 # arcsec
instrument="SEQ"
#
LMTOY>> this is your startup lmtoy_84475.rc file:
# seq_pipeline: 2-feb-2022
# DATE: 2022-02-03T21:31:53.575468479
# obsnum=84475
# Using ifproc=/n/lma1/lmt/data_lmt//ifproc/ifproc_2019-05-30_084475_01_0000.nc
# path=/n/lma1/lmt/data_lmt/
#
# version=2-feb-2022
# ifproc="/n/lma1/lmt/data_lmt//ifproc/ifproc_2019-05-30_084475_01_0000.nc"
date_obs="2019-05-30T06:38:25"
# skytime=3947.26 sec
# inttime=1396.92 sec
obsnum="84475"
calobsnum="84474"
obspgm="Map"
obsgoal="Science"
ProjectId="2018-S1-MU-45"
# SkyOff=0 0
# HPBW=14 arcsec
# XYLength=180 180 arcsec
# XYRamp=0 0 arcsec
# XYoff=0 0 arcsec
# XYstep=0.85 0.3
numbands=1
vlsr=2.6 # km/s
skyfreq=95.96046941201965 # GHz
restfreq=95.955 # Ghz
src="L1157-B1"
resolution=13 # arcsec
cell=6.5 # arcsec
x_extent=180 # arcsec
y_extent=180 # arcsec
instrument="SEQ"
#
# based on vlsr=2.6, dv=100, dw=250
b_order=0
b_regions=[[-347.4,-97.4],[102.6,352.6]]
l_regions=[[-97.4,102.6]]
slice=[-347.4,352.6]
v_range=-97.4,102.6
pix_list=0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15
rmax=3
otf_a=1.1
otf_b=4.75
otf_c=2
sample=-1
otf_cal=0
edge=0
LMTOY>> Sleeping for 5 seconds, you can abort, edit lmtoy_84475.rc, then continuing
LMTOY>> process_otf_map2 in 2 seconds
{'--b_order': '0',
'--b_regions': '[[-347.4,-97.4],[102.6,352.6]]',
'--bank': '0',
'--eliminate_list': '0',
'--help': False,
'--l_regions': '[[-97.4,102.6]]',
'--obsnum': '84475',
'--output': 'L1157-B1_84475.nc',
'--path': '/n/lma1/lmt/data_lmt/',
'--pix_list': '0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15',
'--restfreq': None,
'--sample': None,
'--save_tsys': False,
'--slice': '[-347.4,352.6]',
'--stype': '2',
'--tsys': '250.0',
'--use_cal': True,
'--use_otf_cal': False,
'--x_axis': 'VLSR'}
program process_otf_map options
use_cal = True
tsys = 250.0
path = /n/lma1/lmt/data_lmt/
data_path = /n/lma1/lmt/data_lmt/
obsnum = 84475
eliminate_list = [0]
pix_list = [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]
use_otf_cal = False
output = L1157-B1_84475.nc
x_axis = VLSR
b_order = 0
slice = [-347.4, 352.6]
output_file_name = L1157-B1_84475.nc
stype = 2
b_regions = [[-347.4, -97.4], [102.6, 352.6]]
bank = 0
l_regions = [[-97.4, 102.6]]
2019-05-30T06:38:25 begin /n/lma1/lmt/data_lmt/ifproc/ifproc_2019-05-30_084475_01_0000.nc
2019-05-30T07:44:13 end /n/lma1/lmt/data_lmt/ifproc/ifproc_2019-05-30_084475_01_0000.nc
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BufPos 802 5.1 sec 84475
BufPos 803 7.0 sec 84475
BufPos 1 11.0 sec 84475
before read npix
from pixels npix = 16
from xlen npix = 16
TRACKING Sequoia PIXEL 10
Map Parameters: Ra Discrete
HPBW= 14.0 XLength= 180.0 YLength= 180.0 XStep= 0.85 YStep= 0.30
/n/lma1/lmt/data_lmt/ifproc/ifproc_2019-05-30_084475_01_0000.nc does not have bs parameters
84475 is a Map observation
get chop
'Data.Msip1mm.BeamChopperActPos'
no chop
2019-05-30T06:38:04 begin /n/lma1/lmt/data_lmt/ifproc/ifproc_2019-05-30_084474_00_0001.nc
2019-05-30T06:38:11 end /n/lma1/lmt/data_lmt/ifproc/ifproc_2019-05-30_084474_00_0001.nc
BufPos 3 4.2 sec 84474
BufPos 2 2.5 sec 84474
before read npix
from pixels npix = 16
from xlen npix = 16
TRACKING Sequoia PIXEL 10
/n/lma1/lmt/data_lmt/ifproc/ifproc_2019-05-30_084474_00_0001.nc does not have map parameters
/n/lma1/lmt/data_lmt/ifproc/ifproc_2019-05-30_084474_00_0001.nc does not have bs parameters
84474 is a Cal observation
get chop cal
'Data.Msip1mm.BeamChopperActPos'
no chop cal
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach0/roach0_84475_1_0_L1157-B1_2019-05-30_103821.nc nspec,nchan=81780,2048
r:0 inp:0 pix:0 time_offset:-0.030000
r:0 inp:1 pix:1 time_offset:-0.030000
r:0 inp:2 pix:2 time_offset:-0.030000
r:0 inp:3 pix:3 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach1/roach1_84475_1_0_L1157-B1_2019-05-30_103821.nc nspec,nchan=83556,2048
r:1 inp:0 pix:4 time_offset:-0.030000
r:1 inp:1 pix:5 time_offset:-0.030000
r:1 inp:2 pix:6 time_offset:-0.030000
r:1 inp:3 pix:7 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach2/roach2_84475_1_0_L1157-B1_2019-05-30_103821.nc nspec,nchan=85448,2048Traceback (most recent call last):
File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/ifproc/ifproc.py", line 536, in __init__
self.chop = self.nc.variables['Data.Msip1mm.BeamChopperActPos'][:]
KeyError: 'Data.Msip1mm.BeamChopperActPos'
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/ifproc/ifproc.py", line 667, in __init__
self.chop = self.nc.variables['Data.Msip1mm.BeamChopperActPos'][:]
KeyError: 'Data.Msip1mm.BeamChopperActPos'
/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray.
a.partition(kth, axis=axis, kind=kind, order=order)
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:547: RuntimeWarning: divide by zero encountered in true_divide
self.tsys_spectrum = 280 * sky_spectrum / (hot_spectrum -
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:392: RuntimeWarning: invalid value encountered in true_divide
spectra.append((self.raw_spec[i,:] - ref) / ref)
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:392: RuntimeWarning: divide by zero encountered in true_divide
spectra.append((self.raw_spec[i,:] - ref) / ref)
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:434: RuntimeWarning: invalid value encountered in multiply
self.reduced_spectra = np.array(spectra) * tsys_spectrum
r:2 inp:0 pix:8 time_offset:-0.030000
r:2 inp:1 pix:9 time_offset:-0.030000
r:2 inp:2 pix:10 time_offset:-0.030000
r:2 inp:3 pix:11 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach3/roach3_84475_1_0_L1157-B1_2019-05-30_103821.nc nspec,nchan=86864,2048
r:3 inp:0 pix:12 time_offset:-0.030000
r:3 inp:1 pix:13 time_offset:-0.030000
r:3 inp:2 pix:14 time_offset:-0.030000
r:3 inp:3 pix:15 time_offset:-0.030000
RESTFREQ 95.955 GHz
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach0/roach0_84474_0_1_L1157-B1_2019-05-30_103804.nc nspec,nchan=228,2048
r:0 inp:0 pix:0 time_offset:-0.030000
r:0 inp:1 pix:1 time_offset:-0.030000
r:0 inp:2 pix:2 time_offset:-0.030000
r:0 inp:3 pix:3 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach1/roach1_84474_0_1_L1157-B1_2019-05-30_103804.nc nspec,nchan=232,2048
r:1 inp:0 pix:4 time_offset:-0.030000
r:1 inp:1 pix:5 time_offset:-0.030000
r:1 inp:2 pix:6 time_offset:-0.030000
r:1 inp:3 pix:7 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach2/roach2_84474_0_1_L1157-B1_2019-05-30_103804.nc nspec,nchan=236,2048
r:2 inp:0 pix:8 time_offset:-0.030000
r:2 inp:1 pix:9 time_offset:-0.030000
r:2 inp:2 pix:10 time_offset:-0.030000
r:2 inp:3 pix:11 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach3/roach3_84474_0_1_L1157-B1_2019-05-30_103804.nc nspec,nchan=244,2048
r:3 inp:0 pix:12 time_offset:-0.030000
r:3 inp:1 pix:13 time_offset:-0.030000
r:3 inp:2 pix:14 time_offset:-0.030000
r:3 inp:3 pix:15 time_offset:-0.030000
TSYS[0] = 90.0535 +/- 2.2663 (2048 channels)
TSYS[1] = 92.0804 +/- 1.98741 (2048 channels)
TSYS[2] = 90.7155 +/- 1.55589 (2048 channels)
TSYS[3] = 95.3368 +/- 1.92455 (2048 channels)
TSYS[4] = 100.965 +/- 1.11675 (2048 channels)
TSYS[5] = 93.2811 +/- 3.72399 (2048 channels)
TSYS[6] = 95.105 +/- 1.71759 (2048 channels)
TSYS[7] = 102.89 +/- 1.40975 (2048 channels)
TSYS[8] = 109.386 +/- 1.66746 (2048 channels)
TSYS[9] = 93.3041 +/- 2.51063 (2048 channels)
TSYS[10] = 92.2763 +/- 2.08949 (2048 channels)
TSYS[11] = 102.759 +/- 1.0733 (2048 channels)
TSYS[12] = 90.153 +/- 2.12521 (2048 channels)
TSYS[13] = 103.91 +/- 2.57975 (2048 channels)
TSYS[14] = 99.4184 +/- 3.61882 (2048 channels)
TSYS[15] = 106.795 +/- 3.10275 (2048 channels)
Spectral Band velocity range: 1251.71 -1246.51 km/s
Total Number of OTF Spectra = 229820
NSPEC: 229820
NCHAN: 573
FAST_NC: True
Looping over 16 pixel list [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]:
Processing 1 CAL's for Tsys
Pix Nspec Mean Std MAD_std Min Max RMS_max Warnings
TSYS[0] slice: 90.7203 (0.912553) minmax: 89.0449 92.8793
0 14385 0.000 0.479 0.478 -2.518 3.042 0.479 0.996
TSYS[1] slice: 92.8006 (0.526158) minmax: 91.4028 94.0078
1 14385 0.000 0.484 0.484 -2.562 2.578 0.484 0.751
TSYS[2] slice: 90.6095 (0.586838) minmax: 89.0431 91.9589
2 14385 -0.000 0.476 0.476 -2.514 2.655 0.476 0.905
TSYS[3] slice: 96.0942 (1.16719) minmax: 93.9115 99.1581
3 14385 -0.001 0.503 0.503 -3.097 3.065 0.504 1.112
TSYS[4] slice: 101.246 (0.627044) minmax: 99.2968 102.999
4 14348 -0.000 0.528 0.528 -2.915 4.333 0.527 1.421 *M 1.3
TSYS[5] slice: 94.2321 (0.502454) minmax: 92.9933 95.716
5 14348 -0.000 0.493 0.493 -3.007 2.717 0.493 1.029
TSYS[6] slice: 95.5143 (0.658184) minmax: 93.8758 97.1202
6 14348 0.000 0.501 0.500 -3.472 2.649 0.500 1.316 *M 1.3
TSYS[7] slice: 103.533 (0.771083) minmax: 102.058 105.685
7 14348 0.000 0.540 0.539 -3.331 2.835 0.540 1.059
TSYS[8] slice: 110.155 (0.797787) minmax: 108.466 112.241
8 14366 -0.000 0.573 0.573 -3.595 3.776 0.573 1.641 *M 1.3
TSYS[9] slice: 94.6402 (0.499718) minmax: 93.0992 95.9637
9 14366 0.000 0.494 0.494 -2.923 2.549 0.494 0.758
TSYS[10] slice: 92.5686 (0.665359) minmax: 90.688 94.2846
10 14366 0.000 0.486 0.486 -3.265 2.540 0.486 1.001
TSYS[11] slice: 103.045 (0.660398) minmax: 101.465 104.895
11 14366 0.000 0.539 0.539 -2.880 3.005 0.539 1.102
TSYS[12] slice: 90.7899 (0.739539) minmax: 89.2505 92.6316
12 14356 0.000 0.474 0.474 -2.971 3.161 0.474 1.242 *M 1.2
TSYS[13] slice: 104.885 (0.641556) minmax: 103.167 106.561
13 14356 0.000 0.547 0.547 -2.770 2.827 0.547 0.670
TSYS[14] slice: 100.298 (0.802425) minmax: 98.3365 102.024
14 14356 -0.000 0.528 0.528 -2.777 2.674 0.528 0.862
TSYS[15] slice: 107.846 (0.899993) minmax: 105.897 110.246
15 14356 0.000 0.565 0.564 -3.431 3.745 0.565 1.585 *M 1.3
CPU TIME: 115.335 sec
CPU TIME: 115.593 sec
Warnings:
*P ratio: ratio of std/mad too high for data
*M ratio: ratio of std/mad too high for RMS
X-range: -123.748 150.344 Y-range: -121.062 152.737 arcsec
Written L1157-B1_84475.nc
LMTOY>> view_spec_file
{'--help': False,
'--input': 'L1157-B1_84475.nc',
'--pix_list': '0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15',
'--plot_range': '-1,3',
'--plots': 'L1157-B1_84475_specviews',
'--rms_cut': '-4',
'--show_pixel': None,
'--skip_tsys': False}
SLR Plots initialized with 1 method=L1157-B1_84475_specviews
Max sequence=14385
Plots saving in L1157-B1_84475_specviews.1.png
Plots saving in L1157-B1_84475_specviews.2.png
Plots saving in L1157-B1_84475_specviews.3.png
Plots saving in L1157-B1_84475_specviews.4.png
Plots saving in L1157-B1_84475_specviews.5.png
NEW TSYS PIC
SHAPE (1, 16, 573)
PIXEL: 0 [ 0 1 2 ... 14382 14383 14384]
PIXEL: 1 [14385 14386 14387 ... 28767 28768 28769]
PIXEL: 2 [28770 28771 28772 ... 43152 43153 43154]
PIXEL: 3 [43155 43156 43157 ... 57537 57538 57539]
PIXEL: 4 [57540 57541 57542 ... 71885 71886 71887]
PIXEL: 5 [71888 71889 71890 ... 86233 86234 86235]
PIXEL: 6 [ 86236 86237 86238 ... 100581 100582 100583]
PIXEL: 7 [100584 100585 100586 ... 114929 114930 114931]
PIXEL: 8 [114932 114933 114934 ... 129295 129296 129297]
PIXEL: 9 [129298 129299 129300 ... 143661 143662 143663]
PIXEL: 10 [143664 143665 143666 ... 158027 158028 158029]
PIXEL: 11 [158030 158031 158032 ... 172393 172394 172395]
PIXEL: 12 [172396 172397 172398 ... 186749 186750 186751]
PIXEL: 13 [186752 186753 186754 ... 201105 201106 201107]
PIXEL: 14 [201108 201109 201110 ... 215461 215462 215463]
PIXEL: 15 [215464 215465 215466 ... 229817 229818 229819]
Plots saving in L1157-B1_84475_specviews.6.png
/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray.
a.partition(kth, axis=axis, kind=kind, order=order)
SLR Plots initialized with 3 method=L1157-B1_84475_specpoint,png,1
MAD: 0 0.47799778 0.018019213036758457 0.5500746319932253
MAD: 1 0.48379162 0.016832713519391244 0.5511224736168259
MAD: 2 0.47577053 0.01661603033191987 0.5422346544125489
MAD: 3 0.5035152 0.017917366636448193 0.5751846504714214
MAD: 4 0.52684176 0.018284941562340194 0.5999815259310625
MAD: 5 0.49230957 0.017370754133958725 0.5617925868483349
MAD: 6 0.499309 0.01742857019244288 0.5690232841228904
MAD: 7 0.5396769 0.018941132838265432 0.6154414360314064
MAD: 8 0.57216966 0.019751618096786522 0.6511761339090577
MAD: 9 0.49398094 0.017264975269601777 0.5630408452350538
MAD: 10 0.48605978 0.016882090244921273 0.5535881458689063
MAD: 11 0.53858197 0.019457301883135047 0.616411174886361
MAD: 12 0.47377843 0.016185712721238036 0.5385212775321384
MAD: 13 0.54652727 0.01923023522318085 0.6234482073951038
MAD: 14 0.5276203 0.018721489256511722 0.6025062725778048
MAD: 15 0.5646211 0.0198933635424244 0.6441945450586747
Plots saving in L1157-B1_84475_specpoint.1.png
/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray.
a.partition(kth, axis=axis, kind=kind, order=order)
SLR Plots initialized with 3 method=L1157-B1_84475_specpoint,png,2
MAD: 0 0.47799778 0.018019213036758457 0.5500746319932253
MAD: 1 0.48379162 0.016832713519391244 0.5511224736168259
MAD: 2 0.47577053 0.01661603033191987 0.5422346544125489
MAD: 3 0.5035152 0.017917366636448193 0.5751846504714214
MAD: 4 0.52684176 0.018284941562340194 0.5999815259310625
MAD: 5 0.49230957 0.017370754133958725 0.5617925868483349
MAD: 6 0.499309 0.01742857019244288 0.5690232841228904
MAD: 7 0.5396769 0.018941132838265432 0.6154414360314064
MAD: 8 0.57216966 0.019751618096786522 0.6511761339090577
MAD: 9 0.49398094 0.017264975269601777 0.5630408452350538
MAD: 10 0.48605978 0.016882090244921273 0.5535881458689063
MAD: 11 0.53858197 0.019457301883135047 0.616411174886361
MAD: 12 0.47377843 0.016185712721238036 0.5385212775321384
MAD: 13 0.54652727 0.01923023522318085 0.6234482073951038
MAD: 14 0.5276203 0.018721489256511722 0.6025062725778048
MAD: 15 0.5646211 0.0198933635424244 0.6441945450586747
Plots saving in L1157-B1_84475_specpoint.2.png
LMTOY>> make_spec_fits (waterfall)
pix [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]
Min nsamp 14348
Binning [1, 1]
FITS file will be 14348 x 573 x 16
Written waterfall cube to L1157-B1_84475.wf.fits
pix [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]
Min nsamp 14348
Binning [10, 1]
FITS file will be 1434 x 573 x 16
New shape: (16, 573, 1434)
Written waterfall cube to L1157-B1_84475.wf10.fits
LMTOY>> grid_data
{'--cell': '6.5',
'--edge': '0',
'--help': False,
'--input': 'L1157-B1_84475.nc',
'--n_samples': '256',
'--noise_sigma': '1',
'--otf_a': '1.1',
'--otf_b': '4.75',
'--otf_c': '2',
'--otf_select': '1',
'--output': 'L1157-B1_84475.fits',
'--pix_list': '0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15',
'--program_path': 'spec_driver_fits',
'--resolution': '13',
'--rmax': '3',
'--rms_cut': '-4',
'--sample': '-1',
'--weight': 'L1157-B1_84475.wt.fits',
'--x_extent': '180',
'--y_extent': '180'}
STDOUT ****************************
spec_driver_fits LMTSLR 26-jan-2022
CMD: spec_driver_fits -i L1157-B1_84475.nc -o L1157-B1_84475.fits -w L1157-B1_84475.wt.fits -l 13 -c 6.5 -u [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15] -z -4 -s 1 -x 180 -y 180 -f 1 -r 3 -n 256 -0 1.1 -1 4.75 -2 2 -b -1 -e 0
file list=L1157-B1_84475.nc
DEBUG:6.5
sample_list=-1
Warning: sample list is not a multiple of 3
nsamples=1
Processing 1 SpecFiles:
Opening SpecFile file L1157-B1_84475.nc
file: L1157-B1_84475.nc nspec= 229820 nchan= 573
SpecFile version 6-mar-2021
X-range: -123.748 150.344 Y-range: -121.062 152.737 arcsec
X-ramp: -40.348 66.9441 Y-ramp: -37.6619 69.337 arcsec
MapSize: 274.092 x 273.799 arcsec
84475
L1157-B1
DATE-OBS 2019-05-30T06:38:25
CF.n_cells= 7 delta=0.152941 cell=6.5 resol=13 oft_select=1
C-AXIS 2 starts at -347.053
C-AXIS 1 starts at -182
C-AXIS 0 starts at -182
P-AXIS 1 starts at -182
P-AXIS 0 starts at -182
P-AXIS 1 starts at -182
P-AXIS 0 starts at -182
WARNING fuzzy_edge=0
pixel: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
used?: 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
rms_stats: n=229820 rms_cutoff=-4
Cube Completed, 229671/229820 Spectra accepted = 0.999
Weighting Completed, fuzzy_edge=0
Weight at 0.000000 0.000000 is 1567.509644
write to L1157-B1_84475.fits
write weights to L1157-B1_84475.wt.fits
STDERR ****************************
Exit Code: 0
LMTOY>> Some NEMO post-processing
### nemo Debug Info: FITS file: Image size 57 57 573
### Warning [fitsccd]: Setting map minimum from 0 to -2.01063
### Warning [fitsccd]: Setting map maximum from 0 to 2.09754
### nemo Debug Info: There were 845748 blank values in the image (45.429363 %)
### nemo Debug Info: FITS file: Image size 57 57
### Warning [fitsccd]: Setting map minimum from 0 to -56.0647
### Warning [fitsccd]: Setting map maximum from 0 to 1980.9
### nemo Debug Info: There were no blank values set in the image
LMTOY>> STATS L1157-B1_84475.ccd centerbox robust
### Warning [ccdsub]: Sampling will be done
### Warning [ccdsub]: Attempting to fix the WCS
### nemo Debug Info: WCS Corner: 309.769 68.043 -347053
Number of points : 515700
Min and Max : -0.275454 0.287310
Mean and dispersion : 0.000046 0.032786
Skewness and kurtosis : 0.027146 1.459047
Sum and Sum*Dx*Dy*Dz* : 23.619093 -0.093972
Points per beam (map) : 1
N Robust : 504492
Mean Robust : -0.000004
Sigma Robust : 0.029355
Median Robust : 0.000002
0/515700 out-of-range points discarded
LMTOY>> STATS L1157-B1_84475.wt.ccd centerbox robust
### Warning [ccdsub]: Sampling will be done
### Warning [ccdsub]: Attempting to fix the WCS
### nemo Debug Info: WCS Corner: 309.769 68.043 0
Number of points : 900
Min and Max : 117.743843 1980.903442
Mean and dispersion : 1140.491314 452.070102
Skewness and kurtosis : -0.190545 -1.064897
Sum and Sum*Dx*Dy* : 1026442.182259 -3.346235
Points per beam (map) : 1
N Robust : 900
Mean Robust : 1140.491314
Sigma Robust : 452.070102
Median Robust : 1172.490417
0/900 out-of-range points discarded
### nemo Debug Info: Keeping 57*57*573 cube
### Warning [ccdfits]: Replacing header from L1157-B1_84475.wt.fits
SLABS: [[-347.4,-97.4],[102.6,352.6]] == -347.4,-97.4,102.6,352.6
### Warning [ccdslice]: axis=1 not fully supported yet
### nemo Debug Info: Axis: 573 0 -347053 1220.43
### nemo Debug Info: Axis min/max: -347053 351033
### nemo Debug Info: slab -347.4 -97.4 -> 0 204
### Warning [ccdslice]: 573 >= 573:
### nemo Debug Info: slab 102.6 352.6 -> 368 572
### nemo Debug Info: Total planes: 410
### Warning [ccdslice]: Code not converted to fix reference pixel value
### Warning [ccdfits]: Replacing header from L1157-B1_84475.wt.fits
### Warning [ccdfits]: Replacing header from L1157-B1_84475.wt.fits
### Warning [ccdfits]: Replacing header from L1157-B1_84475.fits
[0;31mQAC_STATS: L1157-B1_84475-full 1.80285e-05 0.0550754 -2.01063 2.09754 18.3157 0.000503858[0m
### Warning [ccdsub]: Sampling will be done
### Warning [ccdsub]: Attempting to fix the WCS
### nemo Debug Info: WCS Corner: 309.769 68.043 -347053
[0;31mQAC_STATS: L1157-B1_84475-cent 4.58001e-05 0.0327863 -0.275454 0.28731 23.6191 0.00182321[0m
### nemo Debug Info: FITS file: Image size 57 57 573
### Warning [fitsccd]: Setting map minimum from 0 to -0.0142974
### Warning [fitsccd]: Setting map maximum from 0 to 0.0847685
### nemo Debug Info: There were no blank values set in the image
spectab : # 28 28 573 min/mean/sig/max -0.0729841 0.00104701 0.0281413 0.167685 8.58254e-05 0.0356143 0.894881
specstab: # 28 28 573 min/mean/sig/max -0.00772362 0.000563755 0.00714227 0.0689166 2.99697e-06 0.00230107 0.227813
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in
f = aplpy.FITSFigure(fitsfile)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper
return f(*args, **kwargs)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__
self._get_hdu(data, hdu, north, convention=convention,
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu
raise IOError("File not found: " + filename)
OSError: File not found: L1157-B1_84475.mom0.fits
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in
f = aplpy.FITSFigure(fitsfile)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper
return f(*args, **kwargs)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__
self._get_hdu(data, hdu, north, convention=convention,
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu
raise IOError("File not found: " + filename)
OSError: File not found: L1157-B1_84475.mom1.fits
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in
f = aplpy.FITSFigure(fitsfile)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper
return f(*args, **kwargs)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__
self._get_hdu(data, hdu, north, convention=convention,
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu
raise IOError("File not found: " + filename)
OSError: File not found: L1157-B1_84475.mom2.fits
INFO: Auto-setting vmin to -2.318e+02 [aplpy.core]
INFO: Auto-setting vmax to 2.134e+03 [aplpy.core]
INFO: Auto-setting vmin to -2.318e+02 [aplpy.core]
INFO: Auto-setting vmax to 2.134e+03 [aplpy.core]
Writing L1157-B1_84475.wt.png
INFO: Auto-setting vmin to -2.170e+02 [aplpy.core]
INFO: Auto-setting vmax to 2.409e+03 [aplpy.core]
INFO: Auto-setting vmin to -2.170e+02 [aplpy.core]
INFO: Auto-setting vmax to 2.409e+03 [aplpy.core]
Writing L1157-B1_84475.wt2.png
INFO: Auto-setting vmin to -2.081e+02 [aplpy.core]
INFO: Auto-setting vmax to 2.310e+03 [aplpy.core]
INFO: Auto-setting vmin to -2.081e+02 [aplpy.core]
INFO: Auto-setting vmax to 2.310e+03 [aplpy.core]
Writing L1157-B1_84475.wt3.png
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in
f = aplpy.FITSFigure(fitsfile)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper
return f(*args, **kwargs)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__
self._get_hdu(data, hdu, north, convention=convention,
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu
raise IOError("File not found: " + filename)
OSError: File not found: L1157-B1_84475.wtn.fits
INFO: Auto-setting vmin to -1.123e-01 [aplpy.core]
INFO: Auto-setting vmax to 1.247e+00 [aplpy.core]
INFO: Auto-setting vmin to -1.123e-01 [aplpy.core]
INFO: Auto-setting vmax to 1.247e+00 [aplpy.core]
Writing L1157-B1_84475.wtr.png
WARNING: FITSFixedWarning: RADECSYS= 'FK5 ' /
the RADECSYS keyword is deprecated, use RADESYSa. [astropy.wcs.wcs]
INFO: Setting slices=[0] [aplpy.core]
INFO: Auto-setting vmin to -1.767e+03 [aplpy.core]
INFO: Auto-setting vmax to 1.740e+03 [aplpy.core]
INFO: Auto-setting vmin to -1.767e+03 [aplpy.core]
INFO: Auto-setting vmax to 1.740e+03 [aplpy.core]
Writing L1157-B1_84475.mom0.png
LMTOY>> Created L1157-B1_84475.nf.fits and L1157-B1_84475.nfs.fits
LMTOY>> ADMIT post-processing
LMTOY>> lmtoy_admit: 31-oct-2021
/lma1/teuben/lmtoy/examples/lmtoy_admit.sh: line 33: export: `L1157-B1_84475.nfs.fits': not a valid identifier
No PDIR directory used, all work in the current directory
ADMIT = /lma1/teuben/lmtoy/admit
version = 1.0.8.5
CASA_PATH = /n/astromake/opt/casa/58 linux admit lma.astro.umd.edu
CASA_ROOT = /n/astromake/opt/casa/58
prefix = /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7
version = 5.8.0-rel-109
revision = 1
Trying CASA6, no worries if this fails
Traceback (most recent call last):
File "", line 1, in
ImportError: No module named casatools
LMTOY>> ADMIT post-processing
Found 33 Xvfb
1245936 Sl Xvfb
1211976 Sl Xvfb
1211485 Sl Xvfb
1210814 Sl Xvfb
### (1/1) : processing L1157-B1_84475.nfs.fits
L1157-B1_84475.nfs.fits [57, 57, 573] L1157-B1 309.7925 68.01958 -0.0003470534 0.007
/lma1/teuben/lmtoy/admit/admit/test/admit1.py --basename x L1157-B1_84475.nfs.fits
102.349u 5.094s 2:13.33 80.5% 0+0k 36944+171096io 1pf+0w
Logfile: L1157-B1_84475.nfs.fits.log
LMTOY>> lmtoy_admit: 31-oct-2021
/lma1/teuben/lmtoy/examples/lmtoy_admit.sh: line 33: export: `L1157-B1_84475.nf.fits': not a valid identifier
No PDIR directory used, all work in the current directory
ADMIT = /lma1/teuben/lmtoy/admit
version = 1.0.8.5
CASA_PATH = /n/astromake/opt/casa/58 linux admit lma.astro.umd.edu
CASA_ROOT = /n/astromake/opt/casa/58
prefix = /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7
version = 5.8.0-rel-109
revision = 1
Trying CASA6, no worries if this fails
Traceback (most recent call last):
File "", line 1, in
ImportError: No module named casatools
LMTOY>> ADMIT post-processing
### (1/1) : processing L1157-B1_84475.nf.fits
L1157-B1_84475.nf.fits [57, 57, 573] L1157-B1 309.7925 68.01958 -0.0003470534 0.007
/lma1/teuben/lmtoy/admit/admit/test/admit1.py --basename x L1157-B1_84475.nf.fits
55.137u 2.262s 1:08.40 83.9% 0+0k 384+70968io 0pf+0w
Logfile: L1157-B1_84475.nf.fits.log
LMTOY>> Created L1157-B1_84475.fits and L1157-B1_84475.wt.fits
LMTOY>> Parameter file used: lmtoy_84475.rc
LMTOY>> Making summary index.html:
Making index.html for obsnum=84475
L1157-B1_84475_?
L1157-B1_84475_?_specviews
L1157-B1_84475_?_specpoint
Writing index.html
Writing index_pipeline.html
cp: cannot stat 'L1157-B1_84475_?_specviews.1.png': No such file or directory