LMTOY>> seq_combine: 19-nov-2021
LMTOY>> READING lmtoy_functions 19-nov-2021 from /lma1/teuben/lmtoy/examples/seq_combine.sh
No PDIR directory used, all work in the current directory
OBSNUM: 85776
OBSNUMS: 85776,85778
OBSNUMS1: 85776 85778
85776 : 2018-S1-MU-46/85776/lmtoy_85776.rc
85778 : 2018-S1-MU-46/85778/lmtoy_85778.rc
First RC will be used : 2018-S1-MU-46/85776/lmtoy_85776.rc
Using pdir=2018-S1-MU-46/85776_85778
src=Region_J-K
ONS: 2018-S1-MU-46/85776/Region_J-K_85776.nc 2018-S1-MU-46/85778/Region_J-K_85778.nc
OBSNUM range: 85776 85778
FILES: s_nc: ../../2018-S1-MU-46/85776/Region_J-K_85776.nc,../../2018-S1-MU-46/85778/Region_J-K_85778.nc
LMTOY>> grid_data
{'--cell': '5.5',
 '--help': False,
 '--input': '../../2018-S1-MU-46/85776/Region_J-K_85776.nc,../../2018-S1-MU-46/85778/Region_J-K_85778.nc',
 '--n_samples': '256',
 '--noise_sigma': '1',
 '--otf_a': '1.1',
 '--otf_b': '4.75',
 '--otf_c': '2',
 '--otf_select': '1',
 '--output': 'Region_J-K_85776_85778.fits',
 '--pix_list': '0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15',
 '--program_path': 'spec_driver_fits',
 '--resolution': '11',
 '--rmax': '3',
 '--rms_cut': '4',
 '--sample': '-1',
 '--weight': 'Region_J-K_85776_85778.wt.fits',
 '--x_extent': '300',
 '--y_extent': '300'}
STDOUT ****************************
spec_driver_fits LMTSLR 26-sep-2021
CMD: spec_driver_fits -i ../../2018-S1-MU-46/85776/Region_J-K_85776.nc,../../2018-S1-MU-46/85778/Region_J-K_85778.nc -o Region_J-K_85776_85778.fits -w Region_J-K_85776_85778.wt.fits -l 11 -c 5.5 -u [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15] -z 4 -s 1 -x 300 -y 300 -f 1 -r 3 -n 256 -0 1.1 -1 4.75 -2 2 -b -1 
file list=../../2018-S1-MU-46/85776/Region_J-K_85776.nc,../../2018-S1-MU-46/85778/Region_J-K_85778.nc
DEBUG:5.5
sample_list=-1

Warning: sample list is not a multiple of 3
nsamples=1
Processing 2 SpecFiles:
Opening SpecFile file ../../2018-S1-MU-46/85776/Region_J-K_85776.nc
file: ../../2018-S1-MU-46/85776/Region_J-K_85776.nc nspec= 227660 nchan= 689
SpecFile version 6-mar-2021
X-range: -216.22 199.899   Y-range: -185.827 224.666 arcsec
X-ramp:  -132.82 116.499   Y-ramp:  -102.427 141.266 arcsec
MapSize: 416.119 x 410.493 arcsec
85776
Region_J-K
DATE-OBS 2019-10-31T03:01:57
CF.n_cells= 7 delta=0.129412  cell=5.5 resol=11 oft_select=1
C-AXIS 2 starts at 53.9848
C-AXIS 1 starts at -302.5
C-AXIS 0 starts at -302.5
P-AXIS 1 starts at -302.5
P-AXIS 0 starts at -302.5
P-AXIS 1 starts at -302.5
P-AXIS 0 starts at -302.5
WARNING fuzzy_edge=0
pixel:  0  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 
used?:  1  1  1  1  1  1  1  1  1  1  1  1  1  1  1  1 
rms_stats: n=227660 rms_cutoff=4
Opening SpecFile file ../../2018-S1-MU-46/85778/Region_J-K_85778.nc
file: ../../2018-S1-MU-46/85778/Region_J-K_85778.nc nspec= 229332 nchan= 689
SpecFile version 6-mar-2021
X-range: -215.71 197.544   Y-range: -185.766 222.952 arcsec
X-ramp:  -132.31 114.144   Y-ramp:  -102.366 139.552 arcsec
MapSize: 413.254 x 408.717 arcsec
rms_stats: n=229332 rms_cutoff=4
Cube Completed, 447525/456992 Spectra accepted = 0.979
Weighting Completed, fuzzy_edge=0
Weight at 0.000000 0.000000 is 129.258499
write to Region_J-K_85776_85778.fits
write weights to Region_J-K_85776_85778.wt.fits

STDERR ****************************

Exit Code: 0
LMTOY>> Some NEMO post-processing
### nemo Debug Info: FITS file: Image size 111 111 689
### Warning [fitsccd]: Setting map minimum from 0 to -195.112
### Warning [fitsccd]: Setting map maximum from 0 to 210.543
### nemo Debug Info: There were 4683822 blank values in the image (55.174093 %)
### nemo Debug Info: FITS file: Image size 111 111
### Warning [fitsccd]: Setting map minimum from 0 to -3.17936
### Warning [fitsccd]: Setting map maximum from 0 to 158.02
### nemo Debug Info: There were no blank values set in the image
LMTOY>> STATS  Region_J-K_85776_85778.ccd     centerbox robust
### Warning [ccdsub]: Sampling will be done
### Warning [ccdsub]: Attempting to fix the WCS
### nemo Debug Info: WCS Corner: 10.6075 41.5549 53984.8
Number of points       : 2160704
Min and Max            : -0.796083 1.592142
Mean and dispersion    : 0.003169 0.102394
Skewness and kurtosis  : 0.569590 4.934725
Sum and Sum*Dx*Dy*Dz*  : 6847.290703 16.236754
Points per beam (map)  : 1
N Robust               : 2127616
Mean Robust            : 0.001734
Sigma Robust           : 0.092352
Median Robust          : 0.001849
0/2160704 out-of-range points discarded
LMTOY>> STATS  Region_J-K_85776_85778.wt.ccd  centerbox robust
### Warning [ccdsub]: Sampling will be done
### Warning [ccdsub]: Attempting to fix the WCS
### nemo Debug Info: WCS Corner: 10.6075 41.5549 0
Number of points       : 3136
Min and Max            : 16.786171 158.020370
Mean and dispersion    : 112.260321 25.137504
Skewness and kurtosis  : -1.136933 0.541726
Sum and Sum*Dx*Dy*     : 352048.366781 -0.821718
Points per beam (map)  : 1
N Robust               : 3044
Mean Robust            : 114.363111
Sigma Robust           : 22.334152
Median Robust          : 125.239281
0/3136 out-of-range points discarded
### nemo Debug Info: Keeping 111*111*689 cube
### Warning [ccdfits]: Replacing header from Region_J-K_85776_85778.wt.fits
SLABS: [[-646,-396],[-196,54]] == -646,-396,-196,54
### Warning [ccdslice]: axis=1 not fully supported yet
### nemo Debug Info: Axis: 689 0  53984.8 -1015.92
### nemo Debug Info: Axis min/max: 53984.8 -644969
### nemo Debug Info: slab -646 -396 -> 689 442
### nemo Debug Info: slab -196 54 -> 246 0
### nemo Debug Info: Total planes: 495
### Warning [ccdslice]: Code not converted to fix reference pixel value
### Warning [ccdfits]: Replacing header from Region_J-K_85776_85778.wt.fits
### Warning [ccdfits]: Replacing header from Region_J-K_85776_85778.wt.fits
### Warning [ccdfits]: Replacing header from Region_J-K_85776_85778.fits
QAC_STATS: Region_J-K_85776_85778.ccd 0.00321758 0.923733 -195.112 210.543  0 0.0250255
### Warning [ccdsub]: Sampling will be done
### Warning [ccdsub]: Attempting to fix the WCS
### nemo Debug Info: WCS Corner: 10.6075 41.5549 53984.8
QAC_STATS: - 0.00316901 0.102394 -0.796083 1.59214  0 0.0404972
### nemo Debug Info: FITS file: Image size 111 111 689
### Warning [fitsccd]: Setting map minimum from 0 to -0.194254
### Warning [fitsccd]: Setting map maximum from 0 to 0.785754
### nemo Debug Info: There were no blank values set in the image
spectab : # 55 55 689 min/mean/sig/max  -0.256005 0.00183004 0.0852537 0.260411    0.000278274 0.11586   0.96096
specstab: # 55 55 689 min/mean/sig/max  -0.0371778 0.00193828 0.0174831 0.0570601    5.11146e-06 0.00454994   0.184023
LMTOY>> Created Region_J-K_85776_85778.nf.fits and Region_J-K_85776_85778.nfs.fits
LMTOY>> skipping ADMIT post-processing
LMTOY>> Created Region_J-K_85776_85778.fits and Region_J-K_85776_85778.wt.fits
LMTOY>> Parameter file used: 2018-S1-MU-46/85776/lmtoy_85776.rc
LMTOY>> Making summary index.html:
Writing index.html
Writing index_pipeline.html
Writing index_admit.html
Writing index_pars.html
Writing index_log.html
LMTOY>> Created Region_J-K_85776_85778.fits and Region_J-K_85776_85778.wt.fits
LMTOY>> Parameter file used: 2018-S1-MU-46/85776/lmtoy_85776.rc