LMTOY>> seq_pipeline: 2-feb-2022
LMTOY>> READING lmtoy_functions 24-dec-2021 via /lma1/teuben/lmtoy/examples/seq_pipeline.sh
Working directory ./2018-S1-MU-46/85778
LMTOY>> Hang on, creating a bootstrap lmtoy_85778.rc from path=/n/lma1/lmt/data_lmt/
#
# version=2-feb-2022
# ifproc="/n/lma1/lmt/data_lmt//ifproc/ifproc_2019-10-31_085778_00_0001.nc"
date_obs="2019-10-31T03:31:31"
# skytime=1482.67 sec
# inttime=1297.52 sec
obsnum="85778"
calobsnum="85777"
obspgm="Map"
obsgoal="Science"
ProjectId="2018-S1-MU-46"
# SkyOff=0 0
# HPBW=12 arcsec
# XYLength=300 300 arcsec
# XYRamp=0 0 arcsec
# XYoff=0 0 arcsec
# XYstep=1.25 0.4
numbands=1
vlsr=-296 # km/s
skyfreq=115.38504187701244 # GHz
restfreq=115.271204 # Ghz
src="Region_J-K"
resolution=11 # arcsec
cell=5.5 # arcsec
x_extent=300 # arcsec
y_extent=300 # arcsec
instrument="SEQ"
#
LMTOY>> this is your startup lmtoy_85778.rc file:
# seq_pipeline: 2-feb-2022
# DATE: 2022-02-03T21:41:44.561688985
# obsnum=85778
# Using ifproc=/n/lma1/lmt/data_lmt//ifproc/ifproc_2019-10-31_085778_00_0001.nc
# path=/n/lma1/lmt/data_lmt/
#
# version=2-feb-2022
# ifproc="/n/lma1/lmt/data_lmt//ifproc/ifproc_2019-10-31_085778_00_0001.nc"
date_obs="2019-10-31T03:31:31"
# skytime=1482.67 sec
# inttime=1297.52 sec
obsnum="85778"
calobsnum="85777"
obspgm="Map"
obsgoal="Science"
ProjectId="2018-S1-MU-46"
# SkyOff=0 0
# HPBW=12 arcsec
# XYLength=300 300 arcsec
# XYRamp=0 0 arcsec
# XYoff=0 0 arcsec
# XYstep=1.25 0.4
numbands=1
vlsr=-296 # km/s
skyfreq=115.38504187701244 # GHz
restfreq=115.271204 # Ghz
src="Region_J-K"
resolution=11 # arcsec
cell=5.5 # arcsec
x_extent=300 # arcsec
y_extent=300 # arcsec
instrument="SEQ"
#
# based on vlsr=-296, dv=100, dw=250
b_order=0
b_regions=[[-646,-396],[-196,54]]
l_regions=[[-396,-196]]
slice=[-646,54]
v_range=-396,-196
pix_list=0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15
rmax=3
otf_a=1.1
otf_b=4.75
otf_c=2
sample=-1
otf_cal=0
edge=0
LMTOY>> Sleeping for 5 seconds, you can abort, edit lmtoy_85778.rc, then continuing
LMTOY>> process_otf_map2 in 2 seconds
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/ifproc/ifproc.py", line 536, in __init__
self.chop = self.nc.variables['Data.Msip1mm.BeamChopperActPos'][:]
KeyError: 'Data.Msip1mm.BeamChopperActPos'
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/ifproc/ifproc.py", line 667, in __init__
self.chop = self.nc.variables['Data.Msip1mm.BeamChopperActPos'][:]
KeyError: 'Data.Msip1mm.BeamChopperActPos'
/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray.
a.partition(kth, axis=axis, kind=kind, order=order)
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:547: RuntimeWarning: divide by zero encountered in true_divide
self.tsys_spectrum = 280 * sky_spectrum / (hot_spectrum -
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:547: RuntimeWarning: invalid value encountered in true_divide
self.tsys_spectrum = 280 * sky_spectrum / (hot_spectrum -
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:392: RuntimeWarning: invalid value encountered in true_divide
spectra.append((self.raw_spec[i,:] - ref) / ref)
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:392: RuntimeWarning: divide by zero encountered in true_divide
spectra.append((self.raw_spec[i,:] - ref) / ref)
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:434: RuntimeWarning: invalid value encountered in multiply
self.reduced_spectra = np.array(spectra) * tsys_spectrum
{'--b_order': '1',
'--b_regions': '[[-646,-396],[-196,54]]',
'--bank': '0',
'--eliminate_list': '0',
'--help': False,
'--l_regions': '[[-396,-196]]',
'--obsnum': '85778',
'--output': 'Region_J-K_85778.nc',
'--path': '/n/lma1/lmt/data_lmt/',
'--pix_list': '0,1,2,4,5,6,7,8,9,10,11,12,13,14,15',
'--restfreq': None,
'--sample': None,
'--save_tsys': False,
'--slice': '[-646,54]',
'--stype': '2',
'--tsys': '250.0',
'--use_cal': True,
'--use_otf_cal': False,
'--x_axis': 'VLSR'}
program process_otf_map options
obsnum = 85778
pix_list = [0, 1, 2, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]
l_regions = [[-396, -196]]
data_path = /n/lma1/lmt/data_lmt/
stype = 2
output = Region_J-K_85778.nc
tsys = 250.0
use_otf_cal = False
b_regions = [[-646, -396], [-196, 54]]
output_file_name = Region_J-K_85778.nc
eliminate_list = [0]
x_axis = VLSR
b_order = 1
path = /n/lma1/lmt/data_lmt/
slice = [-646, 54]
use_cal = True
bank = 0
2019-10-31T03:31:31 begin /n/lma1/lmt/data_lmt/ifproc/ifproc_2019-10-31_085778_00_0001.nc
2019-10-31T03:56:14 end /n/lma1/lmt/data_lmt/ifproc/ifproc_2019-10-31_085778_00_0001.nc
BufPos 3 4.3 sec 85778
BufPos 2 4.0 sec 85778
BufPos 1 11.3 sec 85778
BufPos 0 723.1 sec 85778
BufPos 1 10.5 sec 85778
BufPos 0 724.4 sec 85778
BufPos 1 5.1 sec 85778
before read npix
from pixels npix = 16
from xlen npix = 16
TRACKING Sequoia PIXEL 10
Map Parameters: Ra Continuous
HPBW= 12.0 XLength= 300.0 YLength= 300.0 XStep= 1.25 YStep= 0.40
/n/lma1/lmt/data_lmt/ifproc/ifproc_2019-10-31_085778_00_0001.nc does not have bs parameters
85778 is a Map observation
get chop
'Data.Msip1mm.BeamChopperActPos'
no chop
2019-10-31T03:31:05 begin /n/lma1/lmt/data_lmt/ifproc/ifproc_2019-10-31_085777_00_0001.nc
2019-10-31T03:31:12 end /n/lma1/lmt/data_lmt/ifproc/ifproc_2019-10-31_085777_00_0001.nc
BufPos 3 4.9 sec 85777
BufPos 2 2.6 sec 85777
before read npix
from pixels npix = 16
from xlen npix = 16
TRACKING Sequoia PIXEL 10
/n/lma1/lmt/data_lmt/ifproc/ifproc_2019-10-31_085777_00_0001.nc does not have map parameters
/n/lma1/lmt/data_lmt/ifproc/ifproc_2019-10-31_085777_00_0001.nc does not have bs parameters
85777 is a Cal observation
get chop cal
'Data.Msip1mm.BeamChopperActPos'
no chop cal
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach0/roach0_85778_0_1_Region_J-K_2019-10-31_073122.nc nspec,nchan=58224,2048
r:0 inp:0 pix:0 time_offset:-0.030000
r:0 inp:1 pix:1 time_offset:-0.030000
r:0 inp:2 pix:2 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach1/roach1_85778_0_1_Region_J-K_2019-10-31_073122.nc nspec,nchan=58232,2048
r:1 inp:0 pix:4 time_offset:-0.030000
r:1 inp:1 pix:5 time_offset:-0.030000
r:1 inp:2 pix:6 time_offset:-0.030000
r:1 inp:3 pix:7 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach2/roach2_85778_0_1_Region_J-K_2019-10-31_073122.nc nspec,nchan=58248,2048
r:2 inp:0 pix:8 time_offset:-0.030000
r:2 inp:1 pix:9 time_offset:-0.030000
r:2 inp:2 pix:10 time_offset:-0.030000
r:2 inp:3 pix:11 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach3/roach3_85778_0_1_Region_J-K_2019-10-31_073122.nc nspec,nchan=58260,2048
r:3 inp:0 pix:12 time_offset:-0.030000
r:3 inp:1 pix:13 time_offset:-0.030000
r:3 inp:2 pix:14 time_offset:-0.030000
r:3 inp:3 pix:15 time_offset:-0.030000
RESTFREQ 115.271 GHz
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach0/roach0_85777_0_1_Region_J-K_2019-10-31_073103.nc nspec,nchan=232,2048
r:0 inp:0 pix:0 time_offset:-0.030000
r:0 inp:1 pix:1 time_offset:-0.030000
r:0 inp:2 pix:2 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach1/roach1_85777_0_1_Region_J-K_2019-10-31_073104.nc nspec,nchan=232,2048
r:1 inp:0 pix:4 time_offset:-0.030000
r:1 inp:1 pix:5 time_offset:-0.030000
r:1 inp:2 pix:6 time_offset:-0.030000
r:1 inp:3 pix:7 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach2/roach2_85777_0_1_Region_J-K_2019-10-31_073104.nc nspec,nchan=240,2048
r:2 inp:0 pix:8 time_offset:-0.030000
r:2 inp:1 pix:9 time_offset:-0.030000
r:2 inp:2 pix:10 time_offset:-0.030000
r:2 inp:3 pix:11 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach3/roach3_85777_0_1_Region_J-K_2019-10-31_073104.nc nspec,nchan=240,2048
r:3 inp:0 pix:12 time_offset:-0.030000
r:3 inp:1 pix:13 time_offset:-0.030000
r:3 inp:2 pix:14 time_offset:-0.030000
r:3 inp:3 pix:15 time_offset:-0.030000
TSYS[0] = 286.267 +/- 17.4587 (2048 channels)
TSYS[1] = 241.334 +/- 18.6012 (2048 channels)
TSYS[2] = 300.034 +/- 23.9305 (2048 channels)
TSYS[4] = 247.898 +/- 17.0539 (2048 channels)
TSYS[5] = 240.697 +/- 14.9994 (2048 channels)
TSYS[6] = 294.755 +/- 24.6235 (2048 channels)
TSYS[7] = 241.375 +/- 17.7877 (2048 channels)
TSYS[8] = 228.995 +/- 15.0521 (2048 channels)
TSYS[9] = 240.105 +/- 14.0014 (2048 channels)
TSYS[10] = 237.153 +/- 13.9785 (2048 channels)
TSYS[11] = 239.307 +/- 15.4019 (2048 channels)
TSYS[12] = 222.174 +/- 13.0965 (2048 channels)
TSYS[13] = 262.484 +/- 26.7497 (2048 channels)
TSYS[14] = 250.966 +/- 13.488 (2048 channels)
TSYS[15] = 252.112 +/- 15.8867 (2048 channels)
Spectral Band velocity range: -1335.8 743.795 km/s
Total Number of OTF Spectra = 214998
NSPEC: 214998
NCHAN: 689
FAST_NC: True
Looping over 15 pixel list [0, 1, 2, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]:
Processing 1 CAL's for Tsys
Pix Nspec Mean Std MAD_std Min Max RMS_max Warnings
TSYS[0] slice: 285.475 (7.05949) minmax: 272.976 299.685
0 14334 0.017 1.524 1.493 -9.692 12.509 1.496 2.862 *M 3.0
TSYS[1] slice: 242.619 (7.21896) minmax: 228.193 254.3
1 14334 -0.016 1.358 1.275 -14.396 11.238 1.295 3.650 *M 6.9
TSYS[2] slice: 302.519 (9.53443) minmax: 284.423 319.012
2 14334 0.007 1.618 1.582 -10.540 14.496 1.595 3.872 *M 4.8
TSYS[4] slice: 247.948 (6.03926) minmax: 235.355 258.755
4 14332 0.027 1.349 1.298 -8.866 14.633 1.300 2.778 *M 3.6
TSYS[5] slice: 240.35 (5.40944) minmax: 229.361 250.232
5 14332 -0.016 1.283 1.258 -10.565 9.383 1.259 2.781 *M 3.5
TSYS[6] slice: 294.488 (9.30706) minmax: 276.724 310.478
6 14332 0.026 1.593 1.541 -9.892 18.261 1.547 3.268 *M 3.5
TSYS[7] slice: 241.423 (5.67064) minmax: 230.342 250.966
7 14332 0.001 1.264 1.257 -7.578 8.636 1.258 2.348 *M 2.3
TSYS[8] slice: 228.166 (5.27611) minmax: 217.64 238.569
8 14334 0.016 1.226 1.194 -8.856 13.365 1.198 2.702 *M 3.5
TSYS[9] slice: 238.917 (5.67568) minmax: 229.338 249.072
9 14334 -0.014 1.300 1.253 -11.914 10.054 1.258 3.152 *M 4.3
TSYS[10] slice: 236.504 (5.91838) minmax: 225.819 246.969
10 14334 0.013 1.246 1.233 -8.267 9.717 1.235 2.347 *M 2.5
TSYS[11] slice: 239.13 (5.65537) minmax: 227.563 249.211
11 14334 -0.000 1.257 1.247 -9.494 8.574 1.248 2.435 *M 2.7
TSYS[12] slice: 222.207 (4.20962) minmax: 213.72 230.76
12 14333 0.015 1.184 1.163 -7.541 11.715 1.169 2.578 *M 3.5
TSYS[13] slice: 262.108 (4.99197) minmax: 252.886 271.491
13 14333 -0.012 1.416 1.374 -12.713 10.828 1.382 3.504 *M 4.5
TSYS[14] slice: 251.059 (4.12283) minmax: 243.271 260.573
14 14333 0.006 1.342 1.313 -9.080 12.293 1.324 3.258 *M 4.4
TSYS[15] slice: 250.975 (5.78519) minmax: 239.909 262.496
15 14333 -0.002 1.325 1.313 -9.179 9.310 1.317 2.517 *M 3.1
CPU TIME: 118.866 sec
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/anaconda3/bin/process_otf_map2.py", line 7, in
exec(compile(f.read(), __file__, 'exec'))
File "/lma1/teuben/lmtoy/SpectralLineReduction/bin/process_otf_map2.py", line 110, in
main(sys.argv[1:])
File "/lma1/teuben/lmtoy/SpectralLineReduction/bin/process_otf_map2.py", line 105, in main
specfile.write_ncdata()
File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/specfile.py", line 325, in write_ncdata
self._create_nc_data()
File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/specfile.py", line 286, in _create_nc_data
nc_tsys[:,:,:] = tmp_tsys[:,:,:]
File "src/netCDF4/_netCDF4.pyx", line 4918, in netCDF4._netCDF4.Variable.__setitem__
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/netCDF4/utils.py", line 365, in _StartCountStride
datashape = broadcasted_shape(shape, datashape)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/netCDF4/utils.py", line 973, in broadcasted_shape
return np.broadcast(a, b).shape
ValueError: shape mismatch: objects cannot be broadcast to a single shape
LMTOY>> view_spec_file
{'--help': False,
'--input': 'Region_J-K_85778.nc',
'--pix_list': '0,1,2,4,5,6,7,8,9,10,11,12,13,14,15',
'--plot_range': '-1,3',
'--plots': 'Region_J-K_85778_specviews',
'--rms_cut': '-4',
'--show_pixel': None,
'--skip_tsys': False}
SLR Plots initialized with 1 method=Region_J-K_85778_specviews
Max sequence=14334
Plots saving in Region_J-K_85778_specviews.1.png
Plots saving in Region_J-K_85778_specviews.2.png
Plots saving in Region_J-K_85778_specviews.3.png
Plots saving in Region_J-K_85778_specviews.4.png
Plots saving in Region_J-K_85778_specviews.5.png
NEW TSYS PIC
SHAPE (1, 15, 689)
PIXEL: 0 [ 0 1 2 ... 14331 14332 14333]
PIXEL: 1 [14334 14335 14336 ... 28665 28666 28667]
PIXEL: 2 [28668 28669 28670 ... 42999 43000 43001]
PIXEL: 4 [43002 43003 43004 ... 57331 57332 57333]
PIXEL: 5 [57334 57335 57336 ... 71663 71664 71665]
PIXEL: 6 [71666 71667 71668 ... 85995 85996 85997]
PIXEL: 7 [ 85998 85999 86000 ... 100327 100328 100329]
PIXEL: 8 [100330 100331 100332 ... 114661 114662 114663]
PIXEL: 9 [114664 114665 114666 ... 128995 128996 128997]
PIXEL: 10 [128998 128999 129000 ... 143329 143330 143331]
PIXEL: 11 [143332 143333 143334 ... 157663 157664 157665]
PIXEL: 12 [157666 157667 157668 ... 171996 171997 171998]
PIXEL: 13 [171999 172000 172001 ... 186329 186330 186331]
PIXEL: 14 [186332 186333 186334 ... 200662 200663 200664]
PIXEL: 15 [200665 200666 200667 ... 214995 214996 214997]
Plots saving in Region_J-K_85778_specviews.6.png
/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray.
a.partition(kth, axis=axis, kind=kind, order=order)
SLR Plots initialized with 3 method=Region_J-K_85778_specpoint,png,1
MAD: 0 1.4776139 0.04974814454998876 1.676606504133793
MAD: 1 1.254563 0.04192855025562519 1.422277174998636
MAD: 2 1.5623121 0.05176757530043567 1.7693824273614107
MAD: 4 1.2810154 0.04255871657285943 1.4512502624096018
MAD: 5 1.2412009 0.0414926211513037 1.4071714085248925
MAD: 6 1.523886 0.05066604351747047 1.7265501394171718
MAD: 7 1.248669 0.041495537360596746 1.4146511777245525
MAD: 8 1.1818044 0.03996019735279591 1.3416452079750265
MAD: 9 1.2361488 0.0413610382532022 1.4015929872413244
MAD: 10 1.2229846 0.04089515172614303 1.386565159287995
MAD: 11 1.2364004 0.040488561454709186 1.3983546116483045
MAD: 12 1.151562 0.03837307253754881 1.3050542656293211
MAD: 13 1.3556362 0.04619841088051991 1.5404298825738985
MAD: 14 1.2989016 0.04283257513647028 1.4702318584682443
MAD: 15 1.2998664 0.043106168590145384 1.4722911122725688
Plots saving in Region_J-K_85778_specpoint.1.png
/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray.
a.partition(kth, axis=axis, kind=kind, order=order)
SLR Plots initialized with 3 method=Region_J-K_85778_specpoint,png,2
MAD: 0 1.4776139 0.04974814454998876 1.676606504133793
MAD: 1 1.254563 0.04192855025562519 1.422277174998636
MAD: 2 1.5623121 0.05176757530043567 1.7693824273614107
MAD: 4 1.2810154 0.04255871657285943 1.4512502624096018
MAD: 5 1.2412009 0.0414926211513037 1.4071714085248925
MAD: 6 1.523886 0.05066604351747047 1.7265501394171718
MAD: 7 1.248669 0.041495537360596746 1.4146511777245525
MAD: 8 1.1818044 0.03996019735279591 1.3416452079750265
MAD: 9 1.2361488 0.0413610382532022 1.4015929872413244
MAD: 10 1.2229846 0.04089515172614303 1.386565159287995
MAD: 11 1.2364004 0.040488561454709186 1.3983546116483045
MAD: 12 1.151562 0.03837307253754881 1.3050542656293211
MAD: 13 1.3556362 0.04619841088051991 1.5404298825738985
MAD: 14 1.2989016 0.04283257513647028 1.4702318584682443
MAD: 15 1.2998664 0.043106168590145384 1.4722911122725688
Plots saving in Region_J-K_85778_specpoint.2.png
LMTOY>> make_spec_fits (waterfall)
pix [0, 1, 2, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]
Min nsamp 14332
Binning [1, 1]
FITS file will be 14332 x 689 x 15
Written waterfall cube to Region_J-K_85778.wf.fits
pix [0, 1, 2, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]
Min nsamp 14332
Binning [10, 1]
FITS file will be 1433 x 689 x 15
New shape: (15, 689, 1433)
Written waterfall cube to Region_J-K_85778.wf10.fits
LMTOY>> grid_data
{'--cell': '5.5',
'--edge': '0',
'--help': False,
'--input': 'Region_J-K_85778.nc',
'--n_samples': '256',
'--noise_sigma': '1',
'--otf_a': '1.1',
'--otf_b': '4.75',
'--otf_c': '2',
'--otf_select': '1',
'--output': 'Region_J-K_85778.fits',
'--pix_list': '0,1,2,4,5,6,7,8,9,10,11,12,13,14,15',
'--program_path': 'spec_driver_fits',
'--resolution': '11',
'--rmax': '3',
'--rms_cut': '-4',
'--sample': '-1',
'--weight': 'Region_J-K_85778.wt.fits',
'--x_extent': '250',
'--y_extent': '250'}
STDOUT ****************************
spec_driver_fits LMTSLR 26-jan-2022
CMD: spec_driver_fits -i Region_J-K_85778.nc -o Region_J-K_85778.fits -w Region_J-K_85778.wt.fits -l 11 -c 5.5 -u [0,1,2,4,5,6,7,8,9,10,11,12,13,14,15] -z -4 -s 1 -x 250 -y 250 -f 1 -r 3 -n 256 -0 1.1 -1 4.75 -2 2 -b -1 -e 0
file list=Region_J-K_85778.nc
DEBUG:5.5
sample_list=-1
Warning: sample list is not a multiple of 3
nsamples=1
Processing 1 SpecFiles:
Opening SpecFile file Region_J-K_85778.nc
file: Region_J-K_85778.nc nspec= 214998 nchan= 689
SpecFile version 6-mar-2021
X-range: -215.71 190.878 Y-range: -185.766 222.952 arcsec
X-ramp: -132.31 107.478 Y-ramp: -102.366 139.552 arcsec
MapSize: 406.589 x 408.717 arcsec
85778
Region_J-K
DATE-OBS 2019-10-31T03:31:31
CF.n_cells= 7 delta=0.129412 cell=5.5 resol=11 oft_select=1
C-AXIS 2 starts at 53.9848
C-AXIS 1 starts at -247.5
C-AXIS 0 starts at -247.5
P-AXIS 1 starts at -247.5
P-AXIS 0 starts at -247.5
P-AXIS 1 starts at -247.5
P-AXIS 0 starts at -247.5
WARNING fuzzy_edge=0
pixel: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
used?: 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1
rms_stats: n=214998 rms_cutoff=-4
Cube Completed, 210587/214998 Spectra accepted = 0.979
Weighting Completed, fuzzy_edge=0
Weight at 0.000000 0.000000 is 58.741787
write to Region_J-K_85778.fits
write weights to Region_J-K_85778.wt.fits
STDERR ****************************
Exit Code: 0
LMTOY>> Some NEMO post-processing
### nemo Debug Info: FITS file: Image size 91 91 689
### Warning [fitsccd]: Setting map minimum from 0 to -76.5079
### Warning [fitsccd]: Setting map maximum from 0 to 67.3489
### nemo Debug Info: There were 2016014 blank values in the image (35.333897 %)
### nemo Debug Info: FITS file: Image size 91 91
### Warning [fitsccd]: Setting map minimum from 0 to -1.97033
### Warning [fitsccd]: Setting map maximum from 0 to 73.5177
### nemo Debug Info: There were no blank values set in the image
LMTOY>> STATS Region_J-K_85778.ccd centerbox robust
### Warning [ccdsub]: Sampling will be done
### Warning [ccdsub]: Attempting to fix the WCS
### nemo Debug Info: WCS Corner: 10.6151 41.5473 53984.8
Number of points : 1457924
Min and Max : -0.658601 1.659313
Mean and dispersion : 0.003892 0.131353
Skewness and kurtosis : 0.340177 2.131962
Sum and Sum*Dx*Dy*Dz* : 5674.374549 13.455457
Points per beam (map) : 1
N Robust : 1442435
Mean Robust : 0.002273
Sigma Robust : 0.123154
Median Robust : 0.001929
0/1457924 out-of-range points discarded
LMTOY>> STATS Region_J-K_85778.wt.ccd centerbox robust
### Warning [ccdsub]: Sampling will be done
### Warning [ccdsub]: Attempting to fix the WCS
### nemo Debug Info: WCS Corner: 10.6151 41.5473 0
Number of points : 2116
Min and Max : 28.820429 73.517746
Mean and dispersion : 57.288116 5.931653
Skewness and kurtosis : -1.126627 2.549162
Sum and Sum*Dx*Dy* : 121221.653118 -0.282944
Points per beam (map) : 1
N Robust : 1676
Mean Robust : 58.580963
Sigma Robust : 2.307413
Median Robust : 58.911266
0/2116 out-of-range points discarded
### nemo Debug Info: Keeping 91*91*689 cube
### Warning [ccdfits]: Replacing header from Region_J-K_85778.wt.fits
SLABS: [[-646,-396],[-196,54]] == -646,-396,-196,54
### Warning [ccdslice]: axis=1 not fully supported yet
### nemo Debug Info: Axis: 689 0 53984.8 -1015.92
### nemo Debug Info: Axis min/max: 53984.8 -644969
### nemo Debug Info: slab -646 -396 -> 689 442
### nemo Debug Info: slab -196 54 -> 246 0
### nemo Debug Info: Total planes: 495
### Warning [ccdslice]: Code not converted to fix reference pixel value
### Warning [ccdfits]: Replacing header from Region_J-K_85778.wt.fits
### Warning [ccdfits]: Replacing header from Region_J-K_85778.wt.fits
### Warning [ccdfits]: Replacing header from Region_J-K_85778.fits
[0;31mQAC_STATS: Region_J-K_85778-full 0.0035469 0.453899 -76.5079 67.3489 13086.6 0.0212952[0m
### Warning [ccdsub]: Sampling will be done
### Warning [ccdsub]: Attempting to fix the WCS
### nemo Debug Info: WCS Corner: 10.6151 41.5473 53984.8
[0;31mQAC_STATS: Region_J-K_85778-cent 0.00389209 0.131353 -0.658601 1.65931 5674.37 0.0379064[0m
### nemo Debug Info: FITS file: Image size 91 91 689
### Warning [fitsccd]: Setting map minimum from 0 to -0.0992293
### Warning [fitsccd]: Setting map maximum from 0 to 0.795026
### nemo Debug Info: There were no blank values set in the image
spectab : # 45 45 689 min/mean/sig/max -0.425445 0.00398384 0.125672 0.402352 0.000544999 0.169798 0.955391
specstab: # 45 45 689 min/mean/sig/max -0.0481546 0.00157798 0.0189809 0.0514789 4.66785e-05 0.00747569 0.278496
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in
f = aplpy.FITSFigure(fitsfile)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper
return f(*args, **kwargs)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__
self._get_hdu(data, hdu, north, convention=convention,
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu
raise IOError("File not found: " + filename)
OSError: File not found: Region_J-K_85778.mom0.fits
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in
f = aplpy.FITSFigure(fitsfile)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper
return f(*args, **kwargs)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__
self._get_hdu(data, hdu, north, convention=convention,
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu
raise IOError("File not found: " + filename)
OSError: File not found: Region_J-K_85778.mom1.fits
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in
f = aplpy.FITSFigure(fitsfile)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper
return f(*args, **kwargs)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__
self._get_hdu(data, hdu, north, convention=convention,
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu
raise IOError("File not found: " + filename)
OSError: File not found: Region_J-K_85778.mom2.fits
INFO: Auto-setting vmin to -8.285e+00 [aplpy.core]
INFO: Auto-setting vmax to 7.902e+01 [aplpy.core]
INFO: Auto-setting vmin to -8.285e+00 [aplpy.core]
INFO: Auto-setting vmax to 7.902e+01 [aplpy.core]
Writing Region_J-K_85778.wt.png
INFO: Auto-setting vmin to -8.353e+00 [aplpy.core]
INFO: Auto-setting vmax to 9.272e+01 [aplpy.core]
INFO: Auto-setting vmin to -8.353e+00 [aplpy.core]
INFO: Auto-setting vmax to 9.272e+01 [aplpy.core]
Writing Region_J-K_85778.wt2.png
INFO: Auto-setting vmin to -1.720e+03 [aplpy.core]
INFO: Auto-setting vmax to 1.909e+04 [aplpy.core]
INFO: Auto-setting vmin to -1.720e+03 [aplpy.core]
INFO: Auto-setting vmax to 1.909e+04 [aplpy.core]
Writing Region_J-K_85778.wt3.png
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in
f = aplpy.FITSFigure(fitsfile)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper
return f(*args, **kwargs)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__
self._get_hdu(data, hdu, north, convention=convention,
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu
raise IOError("File not found: " + filename)
OSError: File not found: Region_J-K_85778.wtn.fits
INFO: Auto-setting vmin to -1.116e-01 [aplpy.core]
INFO: Auto-setting vmax to 1.239e+00 [aplpy.core]
INFO: Auto-setting vmin to -1.116e-01 [aplpy.core]
INFO: Auto-setting vmax to 1.239e+00 [aplpy.core]
Writing Region_J-K_85778.wtr.png
WARNING: FITSFixedWarning: RADECSYS= 'FK5 ' /
the RADECSYS keyword is deprecated, use RADESYSa. [astropy.wcs.wcs]
INFO: Setting slices=[0] [aplpy.core]
INFO: Auto-setting vmin to -7.085e+03 [aplpy.core]
INFO: Auto-setting vmax to 1.889e+04 [aplpy.core]
INFO: Auto-setting vmin to -7.085e+03 [aplpy.core]
INFO: Auto-setting vmax to 1.889e+04 [aplpy.core]
Writing Region_J-K_85778.mom0.png
LMTOY>> Created Region_J-K_85778.nf.fits and Region_J-K_85778.nfs.fits
LMTOY>> ADMIT post-processing
LMTOY>> lmtoy_admit: 31-oct-2021
/lma1/teuben/lmtoy/examples/lmtoy_admit.sh: line 33: export: `Region_J-K_85778.nfs.fits': not a valid identifier
No PDIR directory used, all work in the current directory
ADMIT = /lma1/teuben/lmtoy/admit
version = 1.0.8.5
CASA_PATH = /n/astromake/opt/casa/58 linux admit lma.astro.umd.edu
CASA_ROOT = /n/astromake/opt/casa/58
prefix = /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7
version = 5.8.0-rel-109
revision = 1
Trying CASA6, no worries if this fails
Traceback (most recent call last):
File "", line 1, in
ImportError: No module named casatools
LMTOY>> ADMIT post-processing
Found 33 Xvfb
1254824 Sl Xvfb
1247243 Sl Xvfb
1245936 Sl Xvfb
1211976 Sl Xvfb
### (1/1) : processing Region_J-K_85778.nfs.fits
Region_J-K_85778.nfs.fits [91, 91, 689] Region_J-K 10.64875 41.5137 5.398476e-05 0.021
/lma1/teuben/lmtoy/admit/admit/test/admit1.py --basename x Region_J-K_85778.nfs.fits
115.403u 3.442s 2:15.64 87.6% 0+0k 1072+200176io 0pf+0w
Logfile: Region_J-K_85778.nfs.fits.log
LMTOY>> lmtoy_admit: 31-oct-2021
/lma1/teuben/lmtoy/examples/lmtoy_admit.sh: line 33: export: `Region_J-K_85778.nf.fits': not a valid identifier
No PDIR directory used, all work in the current directory
ADMIT = /lma1/teuben/lmtoy/admit
version = 1.0.8.5
CASA_PATH = /n/astromake/opt/casa/58 linux admit lma.astro.umd.edu
CASA_ROOT = /n/astromake/opt/casa/58
prefix = /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7
version = 5.8.0-rel-109
revision = 1
Trying CASA6, no worries if this fails
Traceback (most recent call last):
File "", line 1, in
ImportError: No module named casatools
LMTOY>> ADMIT post-processing
### (1/1) : processing Region_J-K_85778.nf.fits
Region_J-K_85778.nf.fits [91, 91, 689] Region_J-K 10.64875 41.5137 5.398476e-05 0.021
/lma1/teuben/lmtoy/admit/admit/test/admit1.py --basename x Region_J-K_85778.nf.fits
63.413u 2.482s 1:17.48 85.0% 0+0k 312+140296io 0pf+0w
Logfile: Region_J-K_85778.nf.fits.log
LMTOY>> Created Region_J-K_85778.fits and Region_J-K_85778.wt.fits
LMTOY>> Parameter file used: lmtoy_85778.rc
LMTOY>> Making summary index.html:
Making index.html for obsnum=85778
Region_J-K_85778_?
Region_J-K_85778_?_specviews
Region_J-K_85778_?_specpoint
Writing index.html
Writing index_pipeline.html
cp: cannot stat 'Region_J-K_85778_?_specviews.1.png': No such file or directory