========================================= The start-up time of CASA may vary depending on whether the shared libraries are cached or not. ========================================= ]0;IPython: 2018-S1-MU-64/92177IPython 5.1.0 -- An enhanced Interactive Python. CASA 5.8.0-109 -- Common Astronomy Software Applications Found an existing telemetry logfile: /home/teuben/.casa/casastats-580-109-1982ac1bc21613821e-20220204-015000.log Telemetry initialized. Telemetry will send anonymized usage statistics to NRAO. You can disable telemetry by adding the following line to your ~/.casarc file: EnableTelemetry: False Adding au casaVersion = 5.8.0-109 imported casatasks and tools using taskinit * The import of casa items did not complete. You may need to update the version of analysisUtils that you are using. See https://casaguides.nrao.edu/index.php/Analysis_Utilities au: 1.4901, casa: 5.8.0 QAC: Root /home/teuben/.casa/QAC QAC: Load contrib/tp2vis.py tp2vis for CASA5 [18-jun-2020 PJT] QAC: Skip distribute/tp2vis.py QAC: Skip tp2vis/tp2vis.py QAC: Load src/qac.py Loading QAC 27-oct-2020 QAC: Load src/ssc.py QAC: Load src/plot.py qac: version 27-oct-2020 qac_root: /home/teuben/.casa/QAC casa:5.8.0 data:/an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7/data ('QAC: ', None) --> CrashReporter initialized. WARNING: No ASAP; ASAPLineFinder cannot function. ('ADMIT1: Version ', '21-dec-2017', 'loglevel ', 15) ('Removing previous results from ', 'SEXTANS-A_92177.nfs.admit') ('Skipping ', 'admit1.apar') ('Found parameter file to execfile', 'SEXTANS-A_92177.nfs.fits.apar') ('Skipping ', '') ('_ADMIT_ROOT=', '/lma1/teuben/lmtoy/admit') ADMIT basedir = /lma1/teuben/lmtoy/examples/2018-S1-MU-64/92177/SEXTANS-A_92177.nfs.admit ADMIT root = /lma1/teuben/lmtoy/admit ADMIT version = 1.0.8.5 ADMIT flowcount = 1 stale = 0 ('Starting a new ADMIT using', 'SEXTANS-A_92177.nfs.fits') ('Found parameter file to cp:', 'SEXTANS-A_92177.nfs.fits.apar') INFO : AT.py : Setting {'basename': 'x', 'file': 'SEXTANS-A_92177.nfs.fits'} for Ingest_AT ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) INFO : AT.py : Setting 'ppp' = True for CubeStats_AT ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) INFO : AT.py : Setting 'numsigma' = 4.0 for CubeSum_AT INFO : AT.py : Setting 'sigma' = 99.0 for CubeSum_AT ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) INFO : AT.py : Setting 'numsigma' = 4.0 for SFind2D_AT INFO : Admit.py : ADMIT run() called [flowcount 1] INFO : INFO : INFO : Executing Ingest_AT - '' (V1.2.13) INFO : INFO : INFO : Run using the following settings: INFO : box : [] INFO : file : SEXTANS-A_92177.nfs.fits INFO : smooth : [] INFO : basename : x INFO : mask : True INFO : pb : INFO : edge : [] INFO : restfreq : -1.0 INFO : vlsr : -999999.9 INFO : usepb : True INFO : TIMING : Ingest ADMIT [ 2.14504600e+00 1.64394493e+09] TIMING : Ingest BEGIN [ 0. 0.] INFO : Ingest_AT.py : OBJECT: SEXTANS-A SHAPE: [ 55 55 689] ALMA OBJECT = SEXTANS-A ALMA DATE-OBS = 2020-03-06T01:49:06 INFO : Ingest_AT.py : basename=x INFO : utils.py : OSTYPE: linux TIMING : Ingest start [ 1.70244000e-01 1.76608086e-01 1.41056250e+03 2.17062500e+02] TIMING : Ingest importfits [ 1.10207000e-01 1.73728943e-01 1.41057812e+03 2.18285156e+02] WARNING : Ingest_AT.py : Adding dummy STOKES-I axis TIMING : Ingest adddegaxes [ 5.69770000e-02 9.51149464e-02 1.41308203e+03 2.21167969e+02] TIMING : Ingest summary-0 [ 1.41080000e-02 1.41661167e-02 1.41308203e+03 2.21167969e+02] TIMING : Ingest mask [ 2.78900000e-02 6.89079762e-02 1.41308203e+03 2.21539062e+02] TIMING : Ingest summary-1 [ 1.33080000e-02 1.92239285e-02 1.41308203e+03 2.21539062e+02] TIMING : Ingest statistics [ 4.83360000e-02 4.84640598e-02 1.43282031e+03 2.42496094e+02] 2022-02-04 03:22:06 WARN importfits::image::commonbeam (file ../../tools/images/image_cmpt.cc, line 753) This image only has one beam, so just returning that INFO : Ingest_AT.py : COMMONBEAM[3] {'major': {'value': 12.6500004, 'unit': 'arcsec'}, 'pa': {'value': 0.0, 'unit': 'deg'}, 'minor': {'value': 12.6500004, 'unit': 'arcsec'}} INFO : Ingest_AT.py : BASICS: [shape] npts min max: [ 55 55 689 1] 1936779 -0.046102 0.058811 INFO : Ingest_AT.py : S/N (all data): 7.864678 INFO : Ingest_AT.py : GOOD PIXELS: 1936779/2084225 (92.925620% good or 7.074380% bad) WARNING : Ingest_AT.py : MASKS: ['mask0'] REGRESSION : CUBE: -0.0461024 0.0588112 0.00747789 55 55 689 7.074380 INFO : Ingest_AT.py : TELESCOPE: LMT INFO : Ingest_AT.py : OBJECT: SEXTANS-A INFO : Ingest_AT.py : REFFREQTYPE: LSRK INFO : Ingest_AT.py : RA Axis 1: 152.783800 -5.500001 27.000000 INFO : Ingest_AT.py : DEC Axis 2: -4.704639 5.500001 27.000000 INFO : Ingest_AT.py : VLSRv = 0.000000 (from source catalog) INFO : Ingest_AT.py : VLSRz = 0.000000 +/- 0.000000 1 values: [ 0.] INFO : Ingest_AT.py : Freq Orig Axis 3: 115.016 0.000390625 0 INFO : Ingest_AT.py : Cube Orig Axis 3: type=Frequency velocity increment=-1.015921 km/s @ fc=115.149890 fw=0.269141 GHz INFO : Ingest_AT.py : RESTFREQ: 115.271 115.271 -1 INFO : Ingest_AT.py : VLSRc= 315.507976 VLSRf= 0.000000 VLSRv= 0.000000 VLSRz= 0.000000 WIDTH= -699.969569 INFO : Ingest_AT.py : VLSR = 315.507976 errs = 0.000000 0.000000 0.000000 width = -1.015921 TIMING : Ingest done [ 5.63863000e-01 5.68551064e-01 1.43557031e+03 2.45457031e+02] TIMING : Ingest END [ 1.017074 1.17694116] INFO : AT.py : BDP_OUT[0] = SpwCube_BDP x.im INFO : INFO : INFO : Executing CubeStats_AT - '' (V1.2.3) INFO : INFO : INFO : Run using the following settings: INFO : ppp : True INFO : psample : -1 INFO : robust : [] INFO : maxvrms : 2.0 INFO : TIMING : CubeStats ADMIT [ 3.22326100e+00 1.64394493e+09] TIMING : CubeStats BEGIN [ 0. 0.] TIMING : CubeStats imval [ 5.24770000e-02 5.33320904e-02 1.43482031e+03 2.45070312e+02] TIMING : CubeStats start [ 1.25360000e-02 1.25739574e-02 1.43482031e+03 2.45070312e+02] TIMING : CubeStats imstat0 [ 1.31171000e-01 1.32297039e-01 1.43283203e+03 2.43753906e+02] TIMING : CubeStats imstat1 [ 1.46855000e-01 1.47296906e-01 1.43452344e+03 2.45347656e+02] INFO : CubeStats_AT.py : sigma varies from 0.003336 to 0.007147; 689/689 channels ok WARNING : CubeStats_AT.py : sigma varies too much, going to clip to 0.00667101 (2.14264 > 2) INFO : CubeStats_AT.py : Computing MaxPos for PeakPointPlot /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7/lib/python2.7/site-packages/numpy/ma/core.py:4144: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") TIMING : CubeStats ppp [ 7.73716000e-01 7.76351929e-01 1.43452344e+03 2.45386719e+02] INFO : CubeStats_AT.py : CubeMax: 0.058811 @ [45 28 7 0] INFO : CubeStats_AT.py : CubeMin: -0.046102 @ [ 34 19 142 0] INFO : CubeStats_AT.py : CubeRMS: 0.005768 INFO : CubeStats_AT.py : RMS Sanity check 1.296503 REGRESSION : CST: 0.005768 1.296503 INFO : CubeStats_AT.py : mean,rms,S/N=-0.000074 0.005768 10.196577 INFO : CubeStats_AT.py : RMS BAD VARIATION RATIO: 1.925295 1.879661 /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7/lib/python2.7/site-packages/matplotlib/collections.py:446: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison if self._edgecolors == 'face': TIMING : CubeStats plotting [ 2.3973 2.58969522 1454.9140625 264.203125 ] TIMING : CubeStats done [ 1.38110000e-02 1.38528347e-02 1.45491406e+03 2.64203125e+02] TIMING : CubeStats summary [ 1.22960000e-02 1.23450756e-02 1.45491406e+03 2.64203125e+02] TIMING : CubeStats END [ 3.552374 3.74999309] INFO : AT.py : BDP_OUT[0] = CubeStats_BDP x.cst INFO : INFO : INFO : Executing CubeSum_AT - '' (V1.2.2) INFO : INFO : INFO : Run using the following settings: INFO : linesum : True INFO : numsigma : 4.0 INFO : zoom : 1 INFO : pad : 5 INFO : sigma : 99.0 INFO : TIMING : CubeSum ADMIT [ 6.83602800e+00 1.64394493e+09] TIMING : CubeSum BEGIN [ 0. 0.] INFO : CubeSum_AT.py : Using constant sigma = 0.005768 TIMING : CubeSum start [ 5.20100000e-02 5.21728992e-02 1.45491406e+03 2.64203125e+02] TIMING : CubeSum immoments [ 6.14060000e-02 1.24309063e-01 1.45491406e+03 2.64593750e+02] 2022-02-04 03:22:11 WARN immoments::image::open (file ../../tools/images/image_cmpt.cc, line 4125) Another image is already open, closing first TIMING : CubeSum statistics [ 1.99270000e-02 2.00200081e-02 1.45491406e+03 2.64593750e+02] INFO : CubeSum_AT.py : Total flux: 1494.770214 (sum=49.413877) REGRESSION : CSM: [1494.7702135453424, 49.41387698192375] TIMING : CubeSum implot [ 1.47034000e-01 6.08558297e+00 1.52691797e+03 2.64636719e+02] TIMING : CubeSum getdata [ 2.16790000e-02 2.17459202e-02 1.52691797e+03 2.64636719e+02] TIMING : CubeSum done [ 2.48307000e-01 2.67482996e-01 1.52691797e+03 2.64640625e+02] TIMING : CubeSum END [ 0.564286 6.58526897] INFO : AT.py : BDP_OUT[0] = Moment_BDP x.csm INFO : INFO : INFO : Executing SFind2D_AT - 'csm' (V1.2.2) INFO : INFO : INFO : Run using the following settings: INFO : nmax : 30 INFO : numsigma : 4.0 INFO : snmax : 35.0 INFO : region : INFO : zoom : 1 INFO : robust : ['hin', 1.5] INFO : sigma : -1.0 INFO : TIMING : SFind2D ADMIT [ 7.46116200e+00 1.64394494e+09] TIMING : SFind2D BEGIN [ 0. 0.] ('BDP', 0, ) ('BDP', 1, ) ('BDP', 2, ) No PB given TIMING : SFind2D start [ 3.38060000e-02 3.39050293e-02 1.52691797e+03 2.64640625e+02] ('ROBUST:', {'fence': 1.5, 'algorithm': 'hinges-fences'}) TIMING : SFind2D imstat [ 4.41100000e-02 4.43599224e-02 1.52691797e+03 2.64964844e+02] INFO : AT.py : Setting 'sigma' = 0.0957501725588 for SFind2D_AT INFO : SFind2D_AT.py : sigma, dmin, dmax, snmax, cutoff 0.0957502 -0.547785 1.20394 35 0.318122 WARNING : SFind2D_AT.py : Temporarely patching your K.km/s units to Jy/beam for ia.findsources() 2022-02-04 03:22:18 WARN imstat::ImageRegion::fromRecord Fit did not converge, resorting to default shape estimates 2022-02-04 03:22:18 WARN imstat::ImageRegion::fromRecord Fit did not converge, resorting to default shape estimates 2022-02-04 03:22:18 WARN imstat::ImageRegion::fromRecord There is no Stokes coordinate in the CoordinateSystem - assuming Stokes I TIMING : SFind2D findsources [ 4.21365000e-01 4.30660009e-01 1.52691797e+03 2.65394531e+02] INFO : SFind2D_AT.py : Right Ascen. Declination X(pix) Y(pix) Peak Flux Major Minor PA SNR INFO : SFind2D_AT.py : K.km/s Jy arcsec arcsec deg INFO : SFind2D_AT.py : 10:11:01.770 -04.42.39.05 44.24 22.93 0.66 4.85 38.012 34.208 85.0 6.9 INFO : SFind2D_AT.py : 10:11:01.841 -04.42.11.49 44.04 27.95 0.978 9.39 86.066 15.757 91.0 10.2 INFO : SFind2D_AT.py : 10:11:01.576 -04.42.41.00 44.76 22.58 0.66 5.77 58.508 27.739 87.8 6.9 INFO : SFind2D_AT.py : 10:11:05.527 -04.43.38.37 34.03 12.15 0.481 1.39 31.776 16.930 79.8 5.0 INFO : SFind2D_AT.py : 10:11:07.339 -04.42.10.80 29.10 28.07 0.398 1.79 27.500 27.500 90.0 4.2 INFO : SFind2D_AT.py : 10:11:07.877 -04.42.42.52 27.64 22.30 0.346 0.86 24.750 16.095 114.5 3.6 INFO : SFind2D_AT.py : 10:11:08.964 -04.42.05.97 24.68 28.95 0.2 0.851 27.181 13.586 74.9 2.1 INFO : SFind2D_AT.py : 10:11:09.594 -04.43.34.21 22.97 12.91 0.0239 1.17 27.500 27.500 180.0 0.2 INFO : SFind2D_AT.py : Wrote ds9.reg TIMING : SFind2D table [ 3.06727000e-01 3.11187029e-01 1.52691797e+03 2.65484375e+02] REGRESSION : CONTFLUX: 8 26.0595 INFO : SFind2D_AT.py : Fitted Gaussian size; NOT deconvolved source size. INFO : SFind2D_AT.py : Restoring Beam: Major axis: 12.7 arcsec , Minor axis: 12.7 arcsec , PA: 0.0 deg TIMING : SFind2D done [ 3.20440000e-01 3.39548826e-01 1.52691797e+03 2.65546875e+02] TIMING : SFind2D END [ 1.140395 1.17364192] INFO : AT.py : BDP_OUT[0] = SourceList_BDP x-csm.sl TIMING : ADMITrun END [ 6.865901 13.34110308] INFO : Admit.py : ADMIT run() finished [flowcount 1] [cpu 6.8659 13.3411 ] ('N sources in CSM:', 8) ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) INFO : AT.py : Setting 'csub' = [0, 0] for LineSegment_AT INFO : Admit.py : ADMIT run() called [flowcount 1] INFO : INFO : INFO : Executing CubeSpectrum_AT - '' (V1.2.5) INFO : INFO : INFO : Run using the following settings: INFO : xaxis : INFO : sources : [0] INFO : pos : [] INFO : TIMING : CubeSpectrum ADMIT [ 8.81874900e+00 1.64394494e+09] TIMING : CubeSpectrum BEGIN [ 0. 0.] INFO : CubeSpectrum_AT.py : CubeStats::maxpos,val=[45, 28, 7],0.058811 TIMING : CubeSpectrum CubeStats-pos [ 4.82920000e-02 4.84139919e-02 1.52691797e+03 2.65550781e+02] INFO : CubeSpectrum_AT.py : CubeSum::maxpos,val=[44, 28],1.203945 TIMING : CubeSpectrum Moment-pos [ 4.15770000e-02 4.16960716e-02 1.52691797e+03 2.65550781e+02] INFO : CubeSpectrum_AT.py : SourceList::maxpos,val=('10h11m01.770s', '-04d42m39.05s'),0.659981 TIMING : CubeSpectrum SourceList-pos [ 3.58830000e-02 3.59787941e-02 1.52691797e+03 2.65550781e+02] TIMING : CubeSpectrum open [ 1.21590000e-02 1.21960640e-02 1.52691797e+03 2.65550781e+02] TIMING : CubeSpectrum imval [ 4.34370000e-02 4.36320305e-02 1.52691797e+03 2.66066406e+02] TIMING : CubeSpectrum imhead [ 4.17640000e-02 4.19049263e-02 1.52691797e+03 2.66066406e+02] TIMING : CubeSpectrum imval [ 2.64851000e-01 2.83501148e-01 1.52691797e+03 2.66250000e+02] TIMING : CubeSpectrum imval [ 2.81060000e-01 2.99513817e-01 1.52691797e+03 2.66250000e+02] REGRESSION : CSP: [0.058811172842979431, 0.057233560830354691, 0.035765301436185837] INFO : CubeSpectrum_AT.py : Writing 3 testCubeSpectrum tables TIMING : CubeSpectrum done [ 2.82220000e-01 3.00876141e-01 1.52666797e+03 2.66000000e+02] TIMING : CubeSpectrum summary [ 1.23380000e-02 1.23839378e-02 1.52666797e+03 2.66000000e+02] TIMING : CubeSpectrum END [ 1.075757 1.13232899] INFO : AT.py : BDP_OUT[0] = CubeSpectrum_BDP x.csp INFO : INFO : INFO : Executing LineSegment_AT - '' (V1.2.3) INFO : INFO : INFO : Run using the following settings: INFO : numsigma : 5.0 INFO : minchan : 4 INFO : edgechannels : 0 INFO : smooth : [] INFO : recalcnoise : False INFO : maxgap : 3 INFO : csub : [0, 0] INFO : iterate : True INFO : segment : ADMIT INFO : TIMING : LineSegment ADMIT [ 9.95503600e+00 1.64394494e+09] TIMING : LineSegment BEGIN [ 0. 0.] TIMING : LineSegment start [ 2.45020000e-02 2.46050358e-02 1.52666797e+03 2.66000000e+02] INFO : LineSegment_AT.py : Attempting Continuum Subtraction for Input Spectra INFO : LineSegment_AT.py : Attempting Continuum Subtraction for Input CubeStats Spectra TIMING : LineSegment getspectrum [ 28.995545 29.08623791 1526.66796875 266.41015625] INFO : LineSegment_AT.py : Detecting segments in CubeSpectrum based data WARNING : specutil.py : 0 [1, 58] WARNING : specutil.py : 1 [146, 151] WARNING : specutil.py : 2 [309, 312] WARNING : specutil.py : 3 [362, 366] WARNING : specutil.py : 4 [533, 537] WARNING : specutil.py : 5 [653, 656] WARNING : specutil.py : 0 [1, 47] WARNING : specutil.py : 1 [356, 365] WARNING : specutil.py : 2 [533, 537] WARNING : specutil.py : 0 [1, 25] WARNING : specutil.py : 1 [32, 37] WARNING : specutil.py : 2 [45, 51] WARNING : specutil.py : 3 [222, 226] WARNING : specutil.py : 4 [242, 245] WARNING : specutil.py : 5 [298, 302] WARNING : specutil.py : 6 [342, 346] WARNING : specutil.py : 7 [420, 423] WARNING : specutil.py : 8 [599, 602] INFO : LineSegment_AT.py : Detecting segments in CubeStats based data WARNING : specutil.py : 0 [1, 20] TIMING : LineSegment segment finder [ 4.775146 4.79242492 1526.66796875 266.41015625] INFO : LineSegment_AT.py : Segment Coverage 115 / 689 = 0.166909 REGRESSION : LINESEG: [[115.01590574262737, 115.02332761813011], [115.01590574262737, 115.03817136913561], [115.07254637146413, 115.07449949659643], [115.13621825077718, 115.13739012585656], [115.15692137717959, 115.15848387728542], [115.22371825670432, 115.22528075681015], [115.27059325987956, 115.27176513495894], [115.01590574262737, 115.03387449384455], [115.15457762702081, 115.15809325225895], [115.22371825670432, 115.22528075681015], [115.01590574262737, 115.02528074326241], [115.02801511844764, 115.02996824357994], [115.03309324379163, 115.0354369939504], [115.10223387347511, 115.10379637358096], [115.11004637400433, 115.11121824908371], [115.13192137548612, 115.13348387559195], [115.14910887665037, 115.15067137675621], [115.17957762871428, 115.18074950379368], [115.2494995084507, 115.25067138353008]] TIMING : LineSegment done [ 2.506209 2.640306 1558.609375 298.19140625] TIMING : LineSegment END [ 36.313909 36.55611801] INFO : AT.py : BDP_OUT[0] = LineSegment_BDP x.lseg TIMING : ADMITrun END [ 44.547272 51.37949514] INFO : Admit.py : ADMIT run() finished [flowcount 1] [cpu 44.5473 51.3795 ] Found 12 segments in LineSegment No ContinuumSub needed INFO : Admit.py : ADMIT run() called [flowcount 1] TIMING : ADMITrun END [ 44.649983 51.55338812] INFO : Admit.py : ADMIT run() finished [flowcount 1] [cpu 44.65 51.5534 ] ('OBJECT = ', 'SEXTANS-A') ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) INFO : AT.py : Setting 'csub' = [0, 0] for LineID_AT INFO : AT.py : Setting 'references' = etc/tier1_lines.list for LineID_AT INFO : Admit.py : ADMIT run() called [flowcount 1] INFO : INFO : INFO : Executing LineID_AT - '' (V1.2.7) INFO : INFO : INFO : Run using the following settings: INFO : numsigma : 5.0 INFO : force : [] INFO : tier1width : 0.0 INFO : online : False INFO : recomblevel : shallow INFO : references : etc/tier1_lines.list INFO : csub : [0, 0] INFO : identifylines : True INFO : iterate : True INFO : segment : ADMIT INFO : allowexotics : False INFO : minchan : 4 INFO : pattern : AUTO INFO : edgechannels : 0 INFO : smooth : [] INFO : recalcnoise : False INFO : vlsr : -999999.99 INFO : maxgap : 3 INFO : reject : [] INFO : method : {'PeakFinder': {'thresh': 0.0}} INFO : mode : ONE INFO : TIMING : LineID ADMIT [ 4.66294160e+01 1.64394498e+09] TIMING : LineID BEGIN [ 0. 0.] INFO : LineID_AT.py : Set vlsr = 315.51 for line identification. INFO : LineID_AT.py : Identifylines = True INFO : LineID_AT.py : Using vlsr = 315.508 INFO : LineID_AT.py : Attempting Continuum Subtraction for Input Spectra TIMING : LineID getspectrum-cubespecs [ 20.708432 20.7593298 1558.609375 298.26171875] INFO : LineID_AT.py : Attempting Continuum Subtraction for Input CubeStats Spectra TIMING : LineID getspectrum-cubestats [ 8.630905 8.65189719 1558.609375 298.26171875] TIMING : LineID segment finder [ 1.44200000e-02 1.44579411e-02 1.55860938e+03 2.98261719e+02] INFO : LineID_AT.py : Detecting segments in CubeSpectrum based data WARNING : specutil.py : 0 [1, 58] WARNING : specutil.py : 1 [146, 151] WARNING : specutil.py : 2 [309, 312] WARNING : specutil.py : 3 [362, 366] WARNING : specutil.py : 4 [533, 537] WARNING : specutil.py : 5 [653, 656] WARNING : specutil.py : 0 [1, 47] WARNING : specutil.py : 1 [356, 365] WARNING : specutil.py : 2 [533, 537] WARNING : specutil.py : 0 [1, 25] WARNING : specutil.py : 1 [32, 37] WARNING : specutil.py : 2 [45, 51] WARNING : specutil.py : 3 [222, 226] WARNING : specutil.py : 4 [242, 245] WARNING : specutil.py : 5 [298, 302] WARNING : specutil.py : 6 [342, 346] WARNING : specutil.py : 7 [420, 423] WARNING : specutil.py : 8 [599, 602] INFO : LineID_AT.py : Detecting segments in CubeStats based data WARNING : specutil.py : 0 [1, 20] INFO : LineID_AT.py : Searching for spectral peaks with method: PeakFinder INFO : LineID_AT.py : Found 1 potential pattern(s) with separation(s) of 28.5 km/s /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7/lib/python2.7/site-packages/scipy/optimize/minpack.py:715: OptimizeWarning: Covariance of the parameters could not be estimated category=OptimizeWarning) INFO : LineID_AT.py : Found line: CO 1-0 @ 115.2712GHz, channels 1 - 602 REGRESSION : LINEID: CO 115.27120 1 602 INFO : LineID_AT.py : Found line: c-HCC13CH 15(15,1)-15(14,2) @ 115.39568GHz, channels 653 - 656 REGRESSION : LINEID: c-HCC13CH 115.39568 653 656 INFO : LineID_AT.py : Line Coverage 606 / 689 = 0.879536 TIMING : LineID done [ 20.84681 21.45034599 1666.83984375 407.69140625] TIMING : LineID END [ 50.215392 50.89089394] INFO : AT.py : BDP_OUT[0] = LineList_BDP x.ll TIMING : ADMITrun END [ 95.216371 102.86149693] INFO : Admit.py : ADMIT run() finished [flowcount 1] [cpu 95.2164 102.861 ] Found 2 lines in LineID ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) INFO : Admit.py : ADMIT run() called [flowcount 1] INFO : INFO : INFO : Executing LineCube_AT - '' (V1.2.2) INFO : INFO : INFO : Run using the following settings: INFO : equalize : False INFO : pad : 5 INFO : fpad : -1.0 INFO : TIMING : LineCube ADMIT [ 9.71464200e+01 1.64394503e+09] TIMING : LineCube BEGIN [ 0. 0.] TIMING : LineCube start [ 6.93660000e-02 7.02960491e-02 1.63330469e+03 3.74316406e+02] TIMING : LineCube pad [ 1.48080000e-02 1.48508549e-02 1.63330469e+03 3.74316406e+02] WARNING : LineCube_AT.py : pad=5 too large, start=-4 resetting to 0 TIMING : LineCube trans-x.CO_115.27120 [ 1.07060000e-01 2.15451002e-01 1.63330469e+03 3.74316406e+02] TIMING : LineCube trans-x.HCC13CH_115.39568 [ 6.94580000e-02 1.81936026e-01 1.63330469e+03 3.74316406e+02] REGRESSION : LC: [0, 607, 648, 661] TIMING : LineCube done [ 2.50240000e-02 2.50921249e-02 1.63330469e+03 3.74316406e+02] TIMING : LineCube END [ 0.298178 0.52012205] INFO : AT.py : BDP_OUT[0] = LineCube_BDP x.CO_115.27120/lc.im INFO : AT.py : BDP_OUT[1] = LineCube_BDP x.HCC13CH_115.39568/lc.im TIMING : ADMITrun END [ 95.717085 103.64275002] INFO : Admit.py : ADMIT run() finished [flowcount 1] [cpu 95.7171 103.643 ] Found 2 lines in LineCube ('LineDir:', 0, 'x.CO_115.27120/lc.im') ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) ('MOMENT_AT:', 8) INFO : AT.py : Setting 'moments' = [0, 1, 2] for Moment_AT INFO : AT.py : Setting 'mom0clip' = 2.0 for Moment_AT ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) ('LineDir:', 1, 'x.HCC13CH_115.39568/lc.im') ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) ('MOMENT_AT:', 10) INFO : AT.py : Setting 'moments' = [0, 1, 2] for Moment_AT INFO : AT.py : Setting 'mom0clip' = 2.0 for Moment_AT ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) INFO : AT.py : Setting 'numsigma' = [3.0] for Moment_AT INFO : AT.py : Setting 'mom0clip' = 2.0 for Moment_AT INFO : Admit.py : ADMIT run() called [flowcount 1] INFO : INFO : INFO : Executing Moment_AT - '@2' (V1.2.2) INFO : INFO : INFO : Run using the following settings: INFO : numsigma : [3.0] INFO : moments : [0] INFO : mom0clip : 2.0 INFO : zoom : 1 INFO : chans : INFO : sigma : -1.0 INFO : TIMING : Moment ADMIT [ 9.77935850e+01 1.64394503e+09] TIMING : Moment BEGIN [ 0. 0.] TIMING : Moment open [ 4.96450000e-02 4.97670174e-02 1.63330469e+03 3.74316406e+02] TIMING : Moment immoments-0 [ 6.90050000e-02 1.96089983e-01 1.63330469e+03 3.74316406e+02] TIMING : Moment mom0clip [ 7.02630000e-02 3.46136093e-01 1.63330469e+03 3.74503906e+02] TIMING : Moment implot [ 9.91730000e-02 3.51801872e-01 1.63330469e+03 3.74503906e+02] TIMING : Moment getdata [ 2.09420000e-02 2.10061073e-02 1.63330469e+03 3.74503906e+02] TIMING : Moment ren+mask_0 [ 4.18405000e-01 4.22920942e-01 1.64307812e+03 3.84277344e+02] TIMING : Moment done [ 1.54510000e-02 1.54869556e-02 1.64307812e+03 3.84277344e+02] TIMING : Moment END [ 0.755929 1.4163301] INFO : AT.py : BDP_OUT[0] = Moment_BDP x-@2.mom_0 INFO : INFO : INFO : Executing Moment_AT - '' (V1.2.2) INFO : INFO : INFO : Run using the following settings: INFO : numsigma : [2.0] INFO : moments : [0, 1, 2] INFO : mom0clip : 2.0 INFO : zoom : 1 INFO : chans : INFO : sigma : -1.0 INFO : TIMING : Moment ADMIT [ 9.86108860e+01 1.64394503e+09] TIMING : Moment BEGIN [ 0. 0.] TIMING : Moment open [ 4.91250000e-02 4.92348671e-02 1.64307812e+03 3.84277344e+02] TIMING : Moment immoments-all [ 8.46810000e-02 3.09112072e-01 1.64307812e+03 3.84277344e+02] TIMING : Moment mom0clip [ 6.76690000e-02 1.24926090e-01 1.64307812e+03 3.84277344e+02] TIMING : Moment implot [ 9.47920000e-02 3.48795891e-01 1.64307812e+03 3.84277344e+02] TIMING : Moment getdata [ 2.11970000e-02 2.12700367e-02 1.64307812e+03 3.84277344e+02] TIMING : Moment ren+mask_0 [ 2.93082000e-01 2.97393084e-01 1.64307812e+03 3.84277344e+02] 2022-02-04 03:23:52 WARN ImageRegrid::regrid You are regridding an image whose beam is not well sampled by the pixel size. Total flux can be lost when regridding such images, especially when the new pixel size is larger than the old pixel size. It is recommended to check the total flux of your input and output image, and if necessary rebin the input to have smaller pixels. TIMING : Moment makemask [ 1.52667000e-01 5.25429964e-01 1.64307812e+03 3.85125000e+02] TIMING : Moment implot [ 8.36040000e-02 3.31769943e-01 1.64307812e+03 3.85125000e+02] TIMING : Moment getdata [ 2.09930000e-02 2.10750103e-02 1.64307812e+03 3.85125000e+02] TIMING : Moment ren+mask_1 [ 3.01286000e-01 3.05707932e-01 1.64307812e+03 3.85125000e+02] 2022-02-04 03:23:53 WARN ImageRegrid::regrid You are regridding an image whose beam is not well sampled by the pixel size. Total flux can be lost when regridding such images, especially when the new pixel size is larger than the old pixel size. It is recommended to check the total flux of your input and output image, and if necessary rebin the input to have smaller pixels. TIMING : Moment makemask [ 1.50455000e-01 4.26573992e-01 1.64307812e+03 3.85125000e+02] TIMING : Moment implot [ 8.05620000e-02 3.12638044e-01 1.64307812e+03 3.85125000e+02] TIMING : Moment getdata [ 2.09530000e-02 2.10158825e-02 1.64307812e+03 3.85125000e+02] TIMING : Moment ren+mask_2 [ 2.94238000e-01 2.99100161e-01 1.64307812e+03 3.85125000e+02] REGRESSION : MOM0FLUX: x.CO_115.27120 12.4285 34.1671 0.0330578 454.13 454.13 197.954 TIMING : Moment mom0flux [ 5.21150000e-02 5.22949696e-02 1.64307812e+03 3.85125000e+02] TIMING : Moment flux-spectrum [ 3.96786000e-01 4.02374029e-01 1.64257812e+03 3.84625000e+02] TIMING : Moment done [ 1.54120000e-02 1.54478550e-02 1.64257812e+03 3.84625000e+02] TIMING : Moment END [ 2.192061 3.87665796] INFO : AT.py : BDP_OUT[0] = Moment_BDP x.CO_115.27120/lc.mom_0 INFO : AT.py : BDP_OUT[1] = Moment_BDP x.CO_115.27120/lc.mom_1 INFO : AT.py : BDP_OUT[2] = Moment_BDP x.CO_115.27120/lc.mom_2 INFO : INFO : INFO : Executing Moment_AT - '@1' (V1.2.2) INFO : INFO : INFO : Run using the following settings: INFO : numsigma : [2.0] INFO : moments : [0, 1, 2] INFO : mom0clip : 2.0 INFO : zoom : 1 INFO : chans : INFO : sigma : -1.0 INFO : TIMING : Moment ADMIT [ 1.00916376e+02 1.64394503e+09] TIMING : Moment BEGIN [ 0. 0.] TIMING : Moment open [ 4.85470000e-02 4.86559868e-02 1.64257812e+03 3.84625000e+02] TIMING : Moment immoments-all [ 6.71310000e-02 2.76169062e-01 1.64257812e+03 3.84625000e+02] TIMING : Moment mom0clip [ 6.72420000e-02 1.38898849e-01 1.64257812e+03 3.84625000e+02] TIMING : Moment implot [ 9.64570000e-02 3.38197947e-01 1.64257812e+03 3.84625000e+02] TIMING : Moment getdata [ 2.11600000e-02 2.12199688e-02 1.64257812e+03 3.84625000e+02] TIMING : Moment ren+mask_0 [ 3.02559000e-01 3.07132006e-01 1.64257812e+03 3.84625000e+02] 2022-02-04 03:23:56 WARN ImageRegrid::regrid You are regridding an image whose beam is not well sampled by the pixel size. Total flux can be lost when regridding such images, especially when the new pixel size is larger than the old pixel size. It is recommended to check the total flux of your input and output image, and if necessary rebin the input to have smaller pixels. TIMING : Moment makemask [ 1.48653000e-01 5.83223104e-01 1.64257812e+03 3.84625000e+02] TIMING : Moment implot [ 7.83750000e-02 3.05313110e-01 1.64257812e+03 3.84625000e+02] TIMING : Moment getdata [ 2.07080000e-02 2.07729340e-02 1.64257812e+03 3.84625000e+02] TIMING : Moment ren+mask_1 [ 2.81225000e-01 2.85754919e-01 1.64257812e+03 3.84625000e+02] 2022-02-04 03:23:57 WARN ImageRegrid::regrid You are regridding an image whose beam is not well sampled by the pixel size. Total flux can be lost when regridding such images, especially when the new pixel size is larger than the old pixel size. It is recommended to check the total flux of your input and output image, and if necessary rebin the input to have smaller pixels. TIMING : Moment makemask [ 1.49419000e-01 4.76125002e-01 1.64257812e+03 3.84625000e+02] TIMING : Moment implot [ 7.80090000e-02 3.05334091e-01 1.64257812e+03 3.84625000e+02] TIMING : Moment getdata [ 2.06340000e-02 2.06978321e-02 1.64257812e+03 3.84625000e+02] TIMING : Moment ren+mask_2 [ 2.73101000e-01 2.77586222e-01 1.64257812e+03 3.84625000e+02] REGRESSION : MOM0FLUX: x.HCC13CH_115.39568 -42.9543 1.70796 0.0330578 324.399 324.399 2.28312 TIMING : Moment mom0flux [ 5.17680000e-02 5.19359112e-02 1.64257812e+03 3.84625000e+02] TIMING : Moment flux-spectrum [ 2.78596000e-01 2.82454014e-01 1.64257812e+03 3.84625000e+02] TIMING : Moment done [ 1.53170000e-02 1.53539181e-02 1.64257812e+03 3.84625000e+02] TIMING : Moment END [ 2.011387 3.76737499] INFO : AT.py : BDP_OUT[0] = Moment_BDP x.HCC13CH_115.39568/lc-@1.mom_0 INFO : AT.py : BDP_OUT[1] = Moment_BDP x.HCC13CH_115.39568/lc-@1.mom_1 INFO : AT.py : BDP_OUT[2] = Moment_BDP x.HCC13CH_115.39568/lc-@1.mom_2 INFO : INFO : INFO : Executing CubeSpectrum_AT - '@1' (V1.2.5) INFO : INFO : INFO : Run using the following settings: INFO : xaxis : INFO : sources : [0] INFO : pos : [] INFO : TIMING : CubeSpectrum ADMIT [ 1.03038013e+02 1.64394504e+09] TIMING : CubeSpectrum BEGIN [ 0. 0.] INFO : CubeSpectrum_AT.py : CubeSum::maxpos,val=[43, 24],0.834654 TIMING : CubeSpectrum Moment-pos [ 5.42810000e-02 5.44240475e-02 1.64257812e+03 3.84625000e+02] TIMING : CubeSpectrum open [ 1.23600000e-02 1.23929977e-02 1.64257812e+03 3.84625000e+02] TIMING : CubeSpectrum imval [ 4.04640000e-02 4.06570435e-02 1.64257812e+03 3.84625000e+02] TIMING : CubeSpectrum imhead [ 4.25240000e-02 4.26669121e-02 1.64257812e+03 3.84625000e+02] REGRESSION : CSP: [0.029699848964810371] INFO : CubeSpectrum_AT.py : Writing 1 testCubeSpectrum tables TIMING : CubeSpectrum done [ 2.86177000e-01 2.90776014e-01 1.64257812e+03 3.84625000e+02] TIMING : CubeSpectrum summary [ 1.24960000e-02 1.25319958e-02 1.64257812e+03 3.84625000e+02] TIMING : CubeSpectrum END [ 0.46062 0.46579814] INFO : AT.py : BDP_OUT[0] = CubeSpectrum_BDP x.CO_115.27120/lc-@1.csp INFO : INFO : INFO : Executing CubeSpectrum_AT - '@2' (V1.2.5) INFO : INFO : INFO : Run using the following settings: INFO : xaxis : INFO : sources : [0] INFO : pos : [] INFO : TIMING : CubeSpectrum ADMIT [ 1.03559646e+02 1.64394504e+09] TIMING : CubeSpectrum BEGIN [ 0. 0.] INFO : CubeSpectrum_AT.py : CubeSum::maxpos,val=[51, 11],0.163238 TIMING : CubeSpectrum Moment-pos [ 5.44150000e-02 5.45721054e-02 1.64257812e+03 3.84625000e+02] TIMING : CubeSpectrum open [ 1.24550000e-02 1.24888420e-02 1.64257812e+03 3.84625000e+02] TIMING : CubeSpectrum imval [ 3.59290000e-02 3.61001492e-02 1.64257812e+03 3.84625000e+02] TIMING : CubeSpectrum imhead [ 4.22570000e-02 4.24129963e-02 1.64257812e+03 3.84625000e+02] REGRESSION : CSP: [0.023626863956451416] INFO : CubeSpectrum_AT.py : Writing 1 testCubeSpectrum tables TIMING : CubeSpectrum done [ 2.80962000e-01 2.85266876e-01 1.64257812e+03 3.84625000e+02] TIMING : CubeSpectrum summary [ 1.26850000e-02 1.27160549e-02 1.64257812e+03 3.84625000e+02] TIMING : CubeSpectrum END [ 0.451066 0.45595694] INFO : AT.py : BDP_OUT[0] = CubeSpectrum_BDP x.HCC13CH_115.39568/lc-@2.csp TIMING : ADMITrun END [ 102.283545 114.41294003] INFO : Admit.py : ADMIT run() finished [flowcount 1] [cpu 102.284 114.413 ]