LMTOY>> seq_combine: 17-dec-2021 LMTOY>> READING lmtoy_functions 24-dec-2021 via /lma1/teuben/lmtoy/examples/seq_combine.sh No PDIR directory used, all work in the current directory OBSNUM: 92177 OBSNUMS: 92177,92178,92787 OBSNUMS1: 92177 92178 92787 92177 : 1 2018-S1-MU-64/92177/lmtoy_92177.rc 92178 : 1 2018-S1-MU-64/92178/lmtoy_92178.rc 92787 : 1 2018-S1-MU-64/92787/lmtoy_92787.rc First RC will be used : 2018-S1-MU-64/92177/lmtoy_92177.rc Using pdir=2018-S1-MU-64/92177_92787 src=SEXTANS-A ONS: 2018-S1-MU-64/92177/SEXTANS-A_92177.nc 2018-S1-MU-64/92178/SEXTANS-A_92178.nc 2018-S1-MU-64/92787/SEXTANS-A_92787.nc OBSNUM range: 92177 92787 FILES: s_nc: ../../2018-S1-MU-64/92177/SEXTANS-A_92177.nc,../../2018-S1-MU-64/92178/SEXTANS-A_92178.nc,../../2018-S1-MU-64/92787/SEXTANS-A_92787.nc LMTOY>> grid_data {'--cell': '5.5', '--edge': '0', '--help': False, '--input': '../../2018-S1-MU-64/92177/SEXTANS-A_92177.nc,../../2018-S1-MU-64/92178/SEXTANS-A_92178.nc,../../2018-S1-MU-64/92787/SEXTANS-A_92787.nc', '--n_samples': '256', '--noise_sigma': '1', '--otf_a': '1.1', '--otf_b': '4.75', '--otf_c': '2', '--otf_select': '1', '--output': 'SEXTANS-A_92177_92787.fits', '--pix_list': '0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15', '--program_path': 'spec_driver_fits', '--resolution': '11', '--rmax': '3', '--rms_cut': '4', '--sample': '-1', '--weight': 'SEXTANS-A_92177_92787.wt.fits', '--x_extent': '150', '--y_extent': '150'} STDOUT **************************** spec_driver_fits LMTSLR 26-jan-2022 CMD: spec_driver_fits -i ../../2018-S1-MU-64/92177/SEXTANS-A_92177.nc,../../2018-S1-MU-64/92178/SEXTANS-A_92178.nc,../../2018-S1-MU-64/92787/SEXTANS-A_92787.nc -o SEXTANS-A_92177_92787.fits -w SEXTANS-A_92177_92787.wt.fits -l 11 -c 5.5 -u [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15] -z 4 -s 1 -x 150 -y 150 -f 1 -r 3 -n 256 -0 1.1 -1 4.75 -2 2 -b -1 -e 0 file list=../../2018-S1-MU-64/92177/SEXTANS-A_92177.nc,../../2018-S1-MU-64/92178/SEXTANS-A_92178.nc,../../2018-S1-MU-64/92787/SEXTANS-A_92787.nc DEBUG:5.5 sample_list=-1 Warning: sample list is not a multiple of 3 nsamples=1 Processing 3 SpecFiles: Opening SpecFile file ../../2018-S1-MU-64/92177/SEXTANS-A_92177.nc file: ../../2018-S1-MU-64/92177/SEXTANS-A_92177.nc nspec= 64756 nchan= 689 SpecFile version 6-mar-2021 X-range: -148.459 110.208 Y-range: -137.793 121.657 arcsec X-ramp: -65.0589 26.8084 Y-ramp: -54.3931 38.257 arcsec MapSize: 258.667 x 259.45 arcsec 92177 SEXTANS-A DATE-OBS 2020-03-06T01:49:06 CF.n_cells= 7 delta=0.129412 cell=5.5 resol=11 oft_select=1 C-AXIS 2 starts at 664.985 C-AXIS 1 starts at -148.5 C-AXIS 0 starts at -148.5 P-AXIS 1 starts at -148.5 P-AXIS 0 starts at -148.5 P-AXIS 1 starts at -148.5 P-AXIS 0 starts at -148.5 WARNING fuzzy_edge=0 pixel: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 used?: 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 rms_stats: n=64756 rms_cutoff=4 Opening SpecFile file ../../2018-S1-MU-64/92178/SEXTANS-A_92178.nc file: ../../2018-S1-MU-64/92178/SEXTANS-A_92178.nc nspec= 64752 nchan= 689 SpecFile version 6-mar-2021 X-range: -152.271 112.535 Y-range: -137.883 127.767 arcsec X-ramp: -68.8705 29.1349 Y-ramp: -54.4833 44.3667 arcsec MapSize: 264.805 x 265.65 arcsec rms_stats: n=64752 rms_cutoff=4 Opening SpecFile file ../../2018-S1-MU-64/92787/SEXTANS-A_92787.nc file: ../../2018-S1-MU-64/92787/SEXTANS-A_92787.nc nspec= 42304 nchan= 689 SpecFile version 6-mar-2021 X-range: -134.153 95.845 Y-range: -109.899 122.782 arcsec X-ramp: -50.7531 12.445 Y-ramp: -26.4985 39.3822 arcsec MapSize: 229.998 x 232.681 arcsec rms_stats: n=42304 rms_cutoff=4 Cube Completed, 171812/171812 Spectra accepted = 1.000 Weighting Completed, fuzzy_edge=0 Weight at 0.000000 0.000000 is 345.837067 write to SEXTANS-A_92177_92787.fits write weights to SEXTANS-A_92177_92787.wt.fits STDERR **************************** Exit Code: 0 LMTOY>> Some NEMO post-processing ### nemo Debug Info: FITS file: Image size 55 55 689 ### Warning [fitsccd]: Setting map minimum from 0 to -3.07336 ### Warning [fitsccd]: Setting map maximum from 0 to 2.42972 ### nemo Debug Info: There were 609076 blank values in the image (29.223140 %) ### nemo Debug Info: FITS file: Image size 55 55 ### Warning [fitsccd]: Setting map minimum from 0 to -1.51514 ### Warning [fitsccd]: Setting map maximum from 0 to 369.372 ### nemo Debug Info: There were no blank values set in the image LMTOY>> STATS SEXTANS-A_92177_92787.ccd centerbox robust ### Warning [ccdsub]: Sampling will be done ### Warning [ccdsub]: Attempting to fix the WCS ### nemo Debug Info: WCS Corner: 152.764 -4.68478 664985 Number of points : 540176 Min and Max : -0.454706 0.481692 Mean and dispersion : -0.000237 0.067802 Skewness and kurtosis : 0.001435 0.900942 Sum and Sum*Dx*Dy*Dz* : -128.031442 -0.303597 Points per beam (map) : 1 N Robust : 530478 Mean Robust : -0.000276 Sigma Robust : 0.062223 Median Robust : -0.000368 0/540176 out-of-range points discarded LMTOY>> STATS SEXTANS-A_92177_92787.wt.ccd centerbox robust ### Warning [ccdsub]: Sampling will be done ### Warning [ccdsub]: Attempting to fix the WCS ### nemo Debug Info: WCS Corner: 152.764 -4.68478 0 Number of points : 784 Min and Max : 41.852898 369.372406 Mean and dispersion : 224.685557 81.478351 Skewness and kurtosis : -0.122214 -0.919983 Sum and Sum*Dx*Dy* : 176153.476917 -0.411161 Points per beam (map) : 1 N Robust : 784 Mean Robust : 224.685557 Sigma Robust : 81.478351 Median Robust : 225.017296 0/784 out-of-range points discarded ### nemo Debug Info: Keeping 55*55*689 cube ### Warning [ccdfits]: Replacing header from SEXTANS-A_92177_92787.wt.fits SLABS: [[-35,215],[415,665]] == -35,215,415,665 ### Warning [ccdslice]: axis=1 not fully supported yet ### nemo Debug Info: Axis: 689 0 664985 -1015.92 ### nemo Debug Info: Axis min/max: 664985 -33968.8 ### nemo Debug Info: slab -35 215 -> 689 442 ### nemo Debug Info: slab 415 665 -> 246 0 ### nemo Debug Info: Total planes: 495 ### Warning [ccdslice]: Code not converted to fix reference pixel value ### Warning [ccdfits]: Replacing header from SEXTANS-A_92177_92787.wt.fits ### Warning [ccdfits]: Replacing header from SEXTANS-A_92177_92787.wt.fits ### Warning [ccdfits]: Replacing header from SEXTANS-A_92177_92787.fits QAC_STATS: SEXTANS-A_92177_92787-full -6.76881e-05 0.14587 -3.07336 2.42972 -99.8501 -0.000688737 ### Warning [ccdsub]: Sampling will be done ### Warning [ccdsub]: Attempting to fix the WCS ### nemo Debug Info: WCS Corner: 152.764 -4.68478 664985 QAC_STATS: SEXTANS-A_92177_92787-cent -0.000237018 0.0678015 -0.454706 0.481692 -128.031 -0.00450813 ### nemo Debug Info: FITS file: Image size 55 55 689 ### Warning [fitsccd]: Setting map minimum from 0 to -0.0384628 ### Warning [fitsccd]: Setting map maximum from 0 to 0.0392871 ### nemo Debug Info: There were no blank values set in the image spectab : # 27 27 689 min/mean/sig/max -0.181898 -0.000131155 0.0500039 0.166312 -2.72135e-05 0.0711127 1.00561 specstab: # 27 27 689 min/mean/sig/max -0.0170785 -0.000336653 0.00593941 0.0224249 -1.39126e-05 0.00220978 0.263081 Traceback (most recent call last): File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in f = aplpy.FITSFigure(fitsfile) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper return f(*args, **kwargs) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__ self._get_hdu(data, hdu, north, convention=convention, File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu raise IOError("File not found: " + filename) OSError: File not found: SEXTANS-A_92177_92787.mom0.fits Traceback (most recent call last): File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in f = aplpy.FITSFigure(fitsfile) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper return f(*args, **kwargs) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__ self._get_hdu(data, hdu, north, convention=convention, File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu raise IOError("File not found: " + filename) OSError: File not found: SEXTANS-A_92177_92787.mom1.fits Traceback (most recent call last): File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in f = aplpy.FITSFigure(fitsfile) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper return f(*args, **kwargs) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__ self._get_hdu(data, hdu, north, convention=convention, File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu raise IOError("File not found: " + filename) OSError: File not found: SEXTANS-A_92177_92787.mom2.fits INFO: Auto-setting vmin to -3.750e+01 [aplpy.core] INFO: Auto-setting vmax to 4.048e+02 [aplpy.core] INFO: Auto-setting vmin to -3.750e+01 [aplpy.core] INFO: Auto-setting vmax to 4.048e+02 [aplpy.core] Writing SEXTANS-A_92177_92787.wt.png INFO: Auto-setting vmin to -4.619e+01 [aplpy.core] INFO: Auto-setting vmax to 5.127e+02 [aplpy.core] INFO: Auto-setting vmin to -4.619e+01 [aplpy.core] INFO: Auto-setting vmax to 5.127e+02 [aplpy.core] Writing SEXTANS-A_92177_92787.wt2.png INFO: Auto-setting vmin to -1.760e+04 [aplpy.core] INFO: Auto-setting vmax to 1.953e+05 [aplpy.core] INFO: Auto-setting vmin to -1.760e+04 [aplpy.core] INFO: Auto-setting vmax to 1.953e+05 [aplpy.core] Writing SEXTANS-A_92177_92787.wt3.png Traceback (most recent call last): File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in f = aplpy.FITSFigure(fitsfile) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper return f(*args, **kwargs) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__ self._get_hdu(data, hdu, north, convention=convention, File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu raise IOError("File not found: " + filename) OSError: File not found: SEXTANS-A_92177_92787.wtn.fits INFO: Auto-setting vmin to -1.106e-01 [aplpy.core] INFO: Auto-setting vmax to 1.227e+00 [aplpy.core] INFO: Auto-setting vmin to -1.106e-01 [aplpy.core] INFO: Auto-setting vmax to 1.227e+00 [aplpy.core] Writing SEXTANS-A_92177_92787.wtr.png WARNING: FITSFixedWarning: RADECSYS= 'FK5 ' / the RADECSYS keyword is deprecated, use RADESYSa. [astropy.wcs.wcs] INFO: Setting slices=[0] [aplpy.core] INFO: Auto-setting vmin to -3.036e+03 [aplpy.core] INFO: Auto-setting vmax to 2.830e+03 [aplpy.core] INFO: Auto-setting vmin to -3.036e+03 [aplpy.core] INFO: Auto-setting vmax to 2.830e+03 [aplpy.core] Writing SEXTANS-A_92177_92787.mom0.png LMTOY>> Created SEXTANS-A_92177_92787.nf.fits and SEXTANS-A_92177_92787.nfs.fits LMTOY>> ADMIT post-processing LMTOY>> lmtoy_admit: 31-oct-2021 /lma1/teuben/lmtoy/examples/lmtoy_admit.sh: line 33: export: `SEXTANS-A_92177_92787.nfs.fits': not a valid identifier No PDIR directory used, all work in the current directory ADMIT = /lma1/teuben/lmtoy/admit version = 1.0.8.5 CASA_PATH = /n/astromake/opt/casa/58 linux admit lma.astro.umd.edu CASA_ROOT = /n/astromake/opt/casa/58 prefix = /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7 version = 5.8.0-rel-109 revision = 1 Trying CASA6, no worries if this fails Traceback (most recent call last): File "", line 1, in ImportError: No module named casatools LMTOY>> ADMIT post-processing ### (1/1) : processing SEXTANS-A_92177_92787.nfs.fits SEXTANS-A_92177_92787.nfs.fits [55, 55, 689] SEXTANS-A 152.7838 -4.704639 0.0006649848 0.008 /lma1/teuben/lmtoy/admit/admit/test/admit1.py --basename x SEXTANS-A_92177_92787.nfs.fits 79.630u 2.483s 1:33.39 87.9% 0+0k 880+88496io 0pf+0w Logfile: SEXTANS-A_92177_92787.nfs.fits.log LMTOY>> lmtoy_admit: 31-oct-2021 /lma1/teuben/lmtoy/examples/lmtoy_admit.sh: line 33: export: `SEXTANS-A_92177_92787.nf.fits': not a valid identifier No PDIR directory used, all work in the current directory ADMIT = /lma1/teuben/lmtoy/admit version = 1.0.8.5 CASA_PATH = /n/astromake/opt/casa/58 linux admit lma.astro.umd.edu CASA_ROOT = /n/astromake/opt/casa/58 prefix = /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7 version = 5.8.0-rel-109 revision = 1 Trying CASA6, no worries if this fails Traceback (most recent call last): File "", line 1, in ImportError: No module named casatools LMTOY>> ADMIT post-processing Found 33 Xvfb 2299548 Sl Xvfb 2298979 Sl Xvfb 2298314 Sl Xvfb 2297812 Sl Xvfb ### (1/1) : processing SEXTANS-A_92177_92787.nf.fits SEXTANS-A_92177_92787.nf.fits [55, 55, 689] SEXTANS-A 152.7838 -4.704639 0.0006649848 0.008 /lma1/teuben/lmtoy/admit/admit/test/admit1.py --basename x SEXTANS-A_92177_92787.nf.fits 50.421u 2.052s 1:03.43 82.7% 0+0k 312+73360io 0pf+0w Logfile: SEXTANS-A_92177_92787.nf.fits.log LMTOY>> Created SEXTANS-A_92177_92787.fits and SEXTANS-A_92177_92787.wt.fits LMTOY>> Parameter file used: 2018-S1-MU-64/92177/lmtoy_92177.rc LMTOY>> Making summary index.html: Making index.html for obsnum=92177_92787 SEXTANS-A_92177_92787_? SEXTANS-A_92177_92787_?_specviews SEXTANS-A_92177_92787_?_specpoint Writing index.html Writing index_pipeline.html cp: cannot stat 'SEXTANS-A_92177_92787_?_specviews.1.png': No such file or directory LMTOY>> Created SEXTANS-A_92177_92787.fits and SEXTANS-A_92177_92787.wt.fits LMTOY>> Parameter file used: 2018-S1-MU-64/92177/lmtoy_92177.rc