LMTOY>> seq_pipeline: 2-feb-2022
LMTOY>> READING lmtoy_functions 24-dec-2021 via /lma1/teuben/lmtoy/examples/seq_pipeline.sh
Working directory ./2018-S1-MU-64/92178
LMTOY>> Hang on, creating a bootstrap lmtoy_92178.rc from path=/n/lma1/lmt/data_lmt/
#
# version=2-feb-2022
# ifproc="/n/lma1/lmt/data_lmt//ifproc/ifproc_2020-03-06_092178_00_0001.nc"
date_obs="2020-03-06T02:10:01"
# skytime=1241.37 sec
# inttime=847.48 sec
obsnum="92178"
calobsnum="92176"
obspgm="Map"
obsgoal="Science"
ProjectId="2018-S1-MU-64"
# SkyOff=0 0
# HPBW=12 arcsec
# XYLength=150 150 arcsec
# XYRamp=0 0 arcsec
# XYoff=0 0 arcsec
# XYstep=1 0.4
numbands=1
vlsr=315 # km/s
skyfreq=115.1450475110937 # GHz
restfreq=115.271204 # Ghz
src="SEXTANS-A"
resolution=11 # arcsec
cell=5.5 # arcsec
x_extent=150 # arcsec
y_extent=150 # arcsec
instrument="SEQ"
#
LMTOY>> this is your startup lmtoy_92178.rc file:
# seq_pipeline: 2-feb-2022
# DATE: 2022-02-03T22:24:58.062553480
# obsnum=92178
# Using ifproc=/n/lma1/lmt/data_lmt//ifproc/ifproc_2020-03-06_092178_00_0001.nc
# path=/n/lma1/lmt/data_lmt/
#
# version=2-feb-2022
# ifproc="/n/lma1/lmt/data_lmt//ifproc/ifproc_2020-03-06_092178_00_0001.nc"
date_obs="2020-03-06T02:10:01"
# skytime=1241.37 sec
# inttime=847.48 sec
obsnum="92178"
calobsnum="92176"
obspgm="Map"
obsgoal="Science"
ProjectId="2018-S1-MU-64"
# SkyOff=0 0
# HPBW=12 arcsec
# XYLength=150 150 arcsec
# XYRamp=0 0 arcsec
# XYoff=0 0 arcsec
# XYstep=1 0.4
numbands=1
vlsr=315 # km/s
skyfreq=115.1450475110937 # GHz
restfreq=115.271204 # Ghz
src="SEXTANS-A"
resolution=11 # arcsec
cell=5.5 # arcsec
x_extent=150 # arcsec
y_extent=150 # arcsec
instrument="SEQ"
#
# based on vlsr=315, dv=100, dw=250
b_order=0
b_regions=[[-35,215],[415,665]]
l_regions=[[215,415]]
slice=[-35,665]
v_range=215,415
pix_list=0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15
rmax=3
otf_a=1.1
otf_b=4.75
otf_c=2
sample=-1
otf_cal=0
edge=0
LMTOY>> Sleeping for 5 seconds, you can abort, edit lmtoy_92178.rc, then continuing
LMTOY>> process_otf_map2 in 2 seconds
{'--b_order': '0',
'--b_regions': '[[-35,215],[415,665]]',
'--bank': '0',
'--eliminate_list': '0',
'--help': False,
'--l_regions': '[[215,415]]',
'--obsnum': '92178',
'--output': 'SEXTANS-A_92178.nc',
'--path': '/n/lma1/lmt/data_lmt/',
'--pix_list': '0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15',
'--restfreq': None,
'--sample': None,
'--save_tsys': False,
'--slice': '[-35,665]',
'--stype': '2',
'--tsys': '250.0',
'--use_cal': True,
'--use_otf_cal': False,
'--x_axis': 'VLSR'}
program process_otf_map options
l_regions = [[215, 415]]
b_order = 0
stype = 2
b_regions = [[-35, 215], [415, 665]]
bank = 0
use_otf_cal = False
output_file_name = SEXTANS-A_92178.nc
obsnum = 92178
data_path = /n/lma1/lmt/data_lmt/
x_axis = VLSR
output = SEXTANS-A_92178.nc
eliminate_list = [0]
tsys = 250.0
use_cal = True
pix_list = [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]
slice = [-35, 665]
path = /n/lma1/lmt/data_lmt/
2020-03-06T02:10:01 begin /n/lma1/lmt/data_lmt/ifproc/ifproc_2020-03-06_092178_00_0001.nc
2020-03-06T02:30:42 end /n/lma1/lmt/data_lmt/ifproc/ifproc_2020-03-06_092178_00_0001.nc
BufPos 1 11.4 sec 92178
BufPos 0 17.7 sec 92178
BufPos 1 21.5 sec 92178
BufPos 0 17.7 sec 92178
BufPos 1 21.4 sec 92178
BufPos 0 17.5 sec 92178
BufPos 1 21.5 sec 92178
BufPos 0 16.8 sec 92178
BufPos 1 24.2 sec 92178
BufPos 0 16.5 sec 92178
BufPos 1 21.4 sec 92178
BufPos 0 17.6 sec 92178
BufPos 1 21.4 sec 92178
BufPos 0 17.6 sec 92178
BufPos 1 21.6 sec 92178
BufPos 0 17.4 sec 92178
BufPos 1 21.2 sec 92178
BufPos 0 16.8 sec 92178
BufPos 1 21.5 sec 92178
BufPos 0 17.1 sec 92178
BufPos 1 21.3 sec 92178
BufPos 0 17.4 sec 92178
BufPos 1 21.5 sec 92178
BufPos 0 17.0 sec 92178
BufPos 1 23.7 sec 92178
BufPos 0 17.2 sec 92178
BufPos 1 21.5 sec 92178
BufPos 0 17.1 sec 92178
BufPos 1 21.2 sec 92178
BufPos 0 17.2 sec 92178
BufPos 1 21.9 sec 92178
BufPos 0 17.0 sec 92178
BufPos 1 21.4 sec 92178
BufPos 0 17.0 sec 92178
BufPos 1 21.7 sec 92178
BufPos 0 17.1 sec 92178
BufPos 1 21.5 sec 92178
BufPos 0 17.2 sec 92178
BufPos 1 21.4 sec 92178
BufPos 0 17.0 sec 92178
BufPos 1 21.7 sec 92178
BufPos 0 17.2 sec 92178
BufPos 1 22.2 sec 92178
BufPos 0 17.1 sec 92178
BufPos 1 21.6 sec 92178
BufPos 0 16.9 sec 92178
BufPos 1 22.0 sec 92178
BufPos 0 17.1 sec 92178
BufPos 1 21.8 sec 92178
BufPos 0 17.1 sec 92178
BufPos 1 21.9 sec 92178
BufPos 0 17.1 sec 92178
BufPos 1 21.4 sec 92178
BufPos 0 17.0 sec 92178
BufPos 1 21.3 sec 92178
BufPos 0 17.1 sec 92178
BufPos 1 21.6 sec 92178
BufPos 0 17.1 sec 92178
BufPos 1 21.5 sec 92178
BufPos 0 17.0 sec 92178
BufPos 1 22.0 sec 92178
BufPos 0 17.1 sec 92178
BufPos 1 22.0 sec 92178
BufPos 0 17.0 sec 92178
BufPos 1 7.2 sec 92178
before read npix
from pixels npix = 16
from xlen npix = 16
TRACKING Sequoia PIXEL 10
Map Parameters: Ra Continuous
HPBW= 12.0 XLength= 150.0 YLength= 150.0 XStep= 1.00 YStep= 0.40
/n/lma1/lmt/data_lmt/ifproc/ifproc_2020-03-06_092178_00_0001.nc does not have bs parameters
92178 is a Map observation
get chop
'Data.Msip1mm.BeamChopperActPos'
no chop
2020-03-06T01:48:45 begin /n/lma1/lmt/data_lmt/ifproc/ifproc_2020-03-06_092176_00_0001.nc
2020-03-06T01:48:52 end /n/lma1/lmt/data_lmt/ifproc/ifproc_2020-03-06_092176_00_0001.nc
BufPos 3 4.6 sec 92176
BufPos 2 2.6 sec 92176
before read npix
from pixels npix = 16
from xlen npix = 16
TRACKING Sequoia PIXEL 10
/n/lma1/lmt/data_lmt/ifproc/ifproc_2020-03-06_092176_00_0001.nc does not have map parameters
/n/lma1/lmt/data_lmt/ifproc/ifproc_2020-03-06_092176_00_0001.nc does not have bs parameters
92176 is a Cal observation
get chop cal
'Data.Msip1mm.BeamChopperActPos'
no chop cal
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach0/roach0_92178_0_1_SEXTANS-A_2020-03-06_070958.nc nspec,nchan=35648,2048
r:0 inp:0 pix:0 time_offset:-0.030000
r:0 inp:1 pix:1 time_offset:-0.030000
r:0 inp:2 pix:2 time_offset:-0.030000
r:0 inp:3 pix:3 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach1/roach1_92178_0_1_SEXTANS-A_2020-03-06_070958.nc nspec,nchan=35760,2048
r:1 inp:0 pix:4 time_offset:-0.030000
r:1 inp:1 pix:5 time_offset:-0.030000
r:1 inp:2 pix:6 time_offset:-0.030000
r:1 inp:3 pix:7 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach2/roach2_92178_0_1_SEXTANS-A_2020-03-06_070958.nc nspec,nchan=35980,2048
r:2 inp:0 pix:8 time_offset:-0.030000
r:2 inp:1 pix:9 time_offset:-0.030000
r:2 inp:2 pix:10 time_offset:-0.030000
r:2 inp:3 pix:11 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach3/roach3_92178_0_1_SEXTANS-A_2020-03-06_070958.nc nspec,nchan=36140,2048
r:3 inp:0 pix:12 time_offset:-0.030000
r:3 inp:1 pix:13 time_offset:-0.030000
r:3 inp:2 pix:14 time_offset:-0.030000
r:3 inp:3 pix:15 time_offset:-0.030000
RESTFREQ 115.271 GHz
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach0/roach0_92176_0_1_SEXTANS-A_2020-03-06_064844.nc nspec,nchan=232,2048
r:0 inp:0 pix:0 time_offset:-0.030000
r:0 inp:1 pix:1 time_offset:-0.030000
r:0 inp:2 pix:2 time_offset:-0.030000
r:0 inp:3 pix:3 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach1/roach1_92176_0_1_SEXTANS-A_2020-03-06_064844.nc nspec,nchan=232,2048
r:1 inp:0 pix:4 time_offset:-0.030000
r:1 inp:1 pix:5 time_offset:-0.030000
r:1 inp:2 pix:6 time_offset:-0.030000
r:1 inp:3 pix:7 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach2/roach2_92176_0_1_SEXTANS-A_2020-03-06_064844.nc nspec,nchan=236,2048
r:2 inp:0 pix:8 time_offset:-0.030000
r:2 inp:1 pix:9 time_offset:-0.030000
r:2 inp:2 pix:10 time_offset:-0.030000
r:2 inp:3 pix:11 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach3/roach3_92176_0_1_SEXTANS-A_2020-03-06_064844.nc nspec,nchan=240,2048
r:3 inp:0 pix:12 time_offset:-0.030000
r:3 inp:1 pix:13 time_offset:-0.030000
r:3 inp:2 pix:14 time_offset:-0.030000
r:3 inp:3 pix:15 time_offset:-0.030000
TSYS[0] = 217.55 +/- 12.551 (2048 channels)
TSYS[1] = 183.751 +/- 8.81898 (2048 channels)
TSYS[2] = 229.364 +/- 13.126 (2048 channels)
TSYS[3] = 172.994 +/- 8.89344 (2048 channels)
TSYS[4] = 187.766 +/- 11.2726 (2048 channels)
TSYS[5] = 180.441 +/- 10.8806 (2048 channels)
TSYS[6] = 213.561 +/- 15.7052 (2048 channels)
TSYS[7] = 183.136 +/- 9.42293 (2048 channels)
TSYS[8] = 172.91 +/- 9.57197 (2048 channels)
TSYS[9] = 183.295 +/- 8.70772 (2048 channels)
TSYS[10] = 178.509 +/- 9.54173 (2048 channels)
TSYS[11] = 181.875 +/- 9.41422 (2048 channels)
TSYS[12] = 166.118 +/- 8.35541 (2048 channels)
TSYS[13] = 204.063 +/- 9.2715 (2048 channels)
TSYS[14] = 190.501 +/- 9.339 (2048 channels)
TSYS[15] = 191.046 +/- 10.6882 (2048 channels)
Spectral Band velocity range: -724.795 1354.8 km/s
Total Number of OTF Spectra = 64752
NSPEC: 64752
NCHAN: 689
FAST_NC: True
Looping over 16 pixel list [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]:
Processing 1 CAL's for Tsys
Pix Nspec Mean Std MAD_std Min Max RMS_max Warnings
TSYS[0] slice: 217.465 (4.54419) minmax: 209.351 225.474
0 4046 0.001 1.124 1.124 -5.537 5.386 1.124 1.268
TSYS[1] slice: 183.815 (3.37822) minmax: 177.1 190.408
1 4046 -0.001 0.950 0.950 -4.664 4.824 0.950 1.069
TSYS[2] slice: 229.198 (4.31669) minmax: 219.494 238.434
2 4046 0.001 1.187 1.187 -6.133 5.730 1.185 1.328
TSYS[3] slice: 173.024 (3.14834) minmax: 166.699 179.318
3 4046 0.001 0.896 0.895 -4.606 4.560 0.896 0.987
TSYS[4] slice: 188.761 (3.87916) minmax: 180.744 195.723
4 4047 -0.000 0.976 0.976 -4.757 5.257 0.974 1.097
TSYS[5] slice: 180.866 (5.21697) minmax: 162.312 188.986
5 4047 -0.002 0.950 0.948 -4.774 4.745 0.952 1.128
TSYS[6] slice: 214.086 (5.10043) minmax: 203.056 223.182
6 4047 -0.001 1.109 1.107 -5.368 5.559 1.106 1.236 Traceback (most recent call last):
File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/ifproc/ifproc.py", line 536, in __init__
self.chop = self.nc.variables['Data.Msip1mm.BeamChopperActPos'][:]
KeyError: 'Data.Msip1mm.BeamChopperActPos'
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/ifproc/ifproc.py", line 667, in __init__
self.chop = self.nc.variables['Data.Msip1mm.BeamChopperActPos'][:]
KeyError: 'Data.Msip1mm.BeamChopperActPos'
/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray.
a.partition(kth, axis=axis, kind=kind, order=order)
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:547: RuntimeWarning: invalid value encountered in true_divide
self.tsys_spectrum = 280 * sky_spectrum / (hot_spectrum -
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:547: RuntimeWarning: divide by zero encountered in true_divide
self.tsys_spectrum = 280 * sky_spectrum / (hot_spectrum -
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:392: RuntimeWarning: invalid value encountered in true_divide
spectra.append((self.raw_spec[i,:] - ref) / ref)
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:392: RuntimeWarning: divide by zero encountered in true_divide
spectra.append((self.raw_spec[i,:] - ref) / ref)
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:434: RuntimeWarning: invalid value encountered in multiply
self.reduced_spectra = np.array(spectra) * tsys_spectrum
TSYS[7] slice: 183.447 (3.42698) minmax: 176.663 189.492
7 4047 0.001 0.949 0.949 -4.817 4.943 0.947 1.055
TSYS[8] slice: 173.438 (3.43191) minmax: 167.005 179.511
8 4047 -0.000 0.898 0.898 -4.319 4.417 0.896 1.010
TSYS[9] slice: 183.715 (3.29444) minmax: 177.374 189.859
9 4047 -0.001 0.951 0.951 -4.589 4.508 0.951 1.059
TSYS[10] slice: 178.908 (3.46936) minmax: 172.123 185.026
10 4047 -0.001 0.926 0.926 -4.517 4.765 0.925 1.036
TSYS[11] slice: 182.167 (3.39685) minmax: 175.5 188.383
11 4047 -0.001 0.943 0.942 -5.074 5.025 0.941 1.043
TSYS[12] slice: 166.241 (2.90877) minmax: 160.476 172.261
12 4048 -0.000 0.863 0.862 -4.067 4.234 0.862 0.976
TSYS[13] slice: 204.459 (3.72622) minmax: 197.728 211.487
13 4048 -0.000 1.058 1.058 -4.949 5.471 1.057 1.175
TSYS[14] slice: 190.855 (3.21974) minmax: 184.289 197.273
14 4048 0.000 0.989 0.989 -4.715 5.054 0.988 1.090
TSYS[15] slice: 191.136 (3.70378) minmax: 183.864 198.228
15 4048 0.001 0.991 0.990 -4.994 4.805 0.991 1.099
CPU TIME: 33.5683 sec
CPU TIME: 33.6609 sec
Warnings:
*P ratio: ratio of std/mad too high for data
*M ratio: ratio of std/mad too high for RMS
X-range: -152.271 112.535 Y-range: -137.883 127.767 arcsec
Written SEXTANS-A_92178.nc
LMTOY>> view_spec_file
{'--help': False,
'--input': 'SEXTANS-A_92178.nc',
'--pix_list': '0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15',
'--plot_range': '-1,3',
'--plots': 'SEXTANS-A_92178_specviews',
'--rms_cut': '-4',
'--show_pixel': None,
'--skip_tsys': False}
SLR Plots initialized with 1 method=SEXTANS-A_92178_specviews
Max sequence=4048
Plots saving in SEXTANS-A_92178_specviews.1.png
Plots saving in SEXTANS-A_92178_specviews.2.png
Plots saving in SEXTANS-A_92178_specviews.3.png
Plots saving in SEXTANS-A_92178_specviews.4.png
Plots saving in SEXTANS-A_92178_specviews.5.png
NEW TSYS PIC
SHAPE (1, 16, 689)
PIXEL: 0 [ 0 1 2 ... 4043 4044 4045]
PIXEL: 1 [4046 4047 4048 ... 8089 8090 8091]
PIXEL: 2 [ 8092 8093 8094 ... 12135 12136 12137]
PIXEL: 3 [12138 12139 12140 ... 16181 16182 16183]
PIXEL: 4 [16184 16185 16186 ... 20228 20229 20230]
PIXEL: 5 [20231 20232 20233 ... 24275 24276 24277]
PIXEL: 6 [24278 24279 24280 ... 28322 28323 28324]
PIXEL: 7 [28325 28326 28327 ... 32369 32370 32371]
PIXEL: 8 [32372 32373 32374 ... 36416 36417 36418]
PIXEL: 9 [36419 36420 36421 ... 40463 40464 40465]
PIXEL: 10 [40466 40467 40468 ... 44510 44511 44512]
PIXEL: 11 [44513 44514 44515 ... 48557 48558 48559]
PIXEL: 12 [48560 48561 48562 ... 52605 52606 52607]
PIXEL: 13 [52608 52609 52610 ... 56653 56654 56655]
PIXEL: 14 [56656 56657 56658 ... 60701 60702 60703]
PIXEL: 15 [60704 60705 60706 ... 64749 64750 64751]
Plots saving in SEXTANS-A_92178_specviews.6.png
/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray.
a.partition(kth, axis=axis, kind=kind, order=order)
SLR Plots initialized with 3 method=SEXTANS-A_92178_specpoint,png,1
MAD: 0 1.1238592 0.03523284534880686 1.2647905484942266
MAD: 1 0.94958067 0.03092843206228844 1.07329439765223
MAD: 2 1.184247 0.03828028406004272 1.337368153146909
MAD: 3 0.89495444 0.029039965620092985 1.0111143054582772
MAD: 4 0.97455335 0.03126379613098904 1.0996085311578674
MAD: 5 0.94875026 0.03242930777844416 1.078467488605842
MAD: 6 1.1067469 0.03469193270993562 1.245514642842306
MAD: 7 0.9467414 0.029569920381620648 1.065021083675683
MAD: 8 0.896247 0.02948720608167236 1.014195853631194
MAD: 9 0.9510072 0.03055878044189988 1.073242309134085
MAD: 10 0.9254234 0.029343958346398663 1.0427992170983633
MAD: 11 0.9409458 0.030721116092546255 1.063830268489295
MAD: 12 0.86139786 0.027210309398640675 0.9702391000289499
MAD: 13 1.057183 0.032547635179759074 1.1873735679864923
MAD: 14 0.9881348 0.030342627474299968 1.1095053112849866
MAD: 15 0.99053884 0.031389458240525865 1.1160966684876161
Plots saving in SEXTANS-A_92178_specpoint.1.png
/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray.
a.partition(kth, axis=axis, kind=kind, order=order)
SLR Plots initialized with 3 method=SEXTANS-A_92178_specpoint,png,2
MAD: 0 1.1238592 0.03523284534880686 1.2647905484942266
MAD: 1 0.94958067 0.03092843206228844 1.07329439765223
MAD: 2 1.184247 0.03828028406004272 1.337368153146909
MAD: 3 0.89495444 0.029039965620092985 1.0111143054582772
MAD: 4 0.97455335 0.03126379613098904 1.0996085311578674
MAD: 5 0.94875026 0.03242930777844416 1.078467488605842
MAD: 6 1.1067469 0.03469193270993562 1.245514642842306
MAD: 7 0.9467414 0.029569920381620648 1.065021083675683
MAD: 8 0.896247 0.02948720608167236 1.014195853631194
MAD: 9 0.9510072 0.03055878044189988 1.073242309134085
MAD: 10 0.9254234 0.029343958346398663 1.0427992170983633
MAD: 11 0.9409458 0.030721116092546255 1.063830268489295
MAD: 12 0.86139786 0.027210309398640675 0.9702391000289499
MAD: 13 1.057183 0.032547635179759074 1.1873735679864923
MAD: 14 0.9881348 0.030342627474299968 1.1095053112849866
MAD: 15 0.99053884 0.031389458240525865 1.1160966684876161
Plots saving in SEXTANS-A_92178_specpoint.2.png
LMTOY>> make_spec_fits (waterfall)
pix [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]
Min nsamp 4046
Binning [1, 1]
FITS file will be 4046 x 689 x 16
Written waterfall cube to SEXTANS-A_92178.wf.fits
pix [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]
Min nsamp 4046
Binning [10, 1]
FITS file will be 404 x 689 x 16
New shape: (16, 689, 404)
Written waterfall cube to SEXTANS-A_92178.wf10.fits
LMTOY>> grid_data
{'--cell': '5.5',
'--edge': '0',
'--help': False,
'--input': 'SEXTANS-A_92178.nc',
'--n_samples': '256',
'--noise_sigma': '1',
'--otf_a': '1.1',
'--otf_b': '4.75',
'--otf_c': '2',
'--otf_select': '1',
'--output': 'SEXTANS-A_92178.fits',
'--pix_list': '0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15',
'--program_path': 'spec_driver_fits',
'--resolution': '11',
'--rmax': '3',
'--rms_cut': '-4',
'--sample': '-1',
'--weight': 'SEXTANS-A_92178.wt.fits',
'--x_extent': '150',
'--y_extent': '150'}
STDOUT ****************************
spec_driver_fits LMTSLR 26-jan-2022
CMD: spec_driver_fits -i SEXTANS-A_92178.nc -o SEXTANS-A_92178.fits -w SEXTANS-A_92178.wt.fits -l 11 -c 5.5 -u [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15] -z -4 -s 1 -x 150 -y 150 -f 1 -r 3 -n 256 -0 1.1 -1 4.75 -2 2 -b -1 -e 0
file list=SEXTANS-A_92178.nc
DEBUG:5.5
sample_list=-1
Warning: sample list is not a multiple of 3
nsamples=1
Processing 1 SpecFiles:
Opening SpecFile file SEXTANS-A_92178.nc
file: SEXTANS-A_92178.nc nspec= 64752 nchan= 689
SpecFile version 6-mar-2021
X-range: -152.271 112.535 Y-range: -137.883 127.767 arcsec
X-ramp: -68.8705 29.1349 Y-ramp: -54.4833 44.3667 arcsec
MapSize: 264.805 x 265.65 arcsec
92178
SEXTANS-A
DATE-OBS 2020-03-06T02:10:01
CF.n_cells= 7 delta=0.129412 cell=5.5 resol=11 oft_select=1
C-AXIS 2 starts at 664.985
C-AXIS 1 starts at -148.5
C-AXIS 0 starts at -148.5
P-AXIS 1 starts at -148.5
P-AXIS 0 starts at -148.5
P-AXIS 1 starts at -148.5
P-AXIS 0 starts at -148.5
WARNING fuzzy_edge=0
pixel: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
used?: 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
rms_stats: n=64752 rms_cutoff=-4
Cube Completed, 64722/64752 Spectra accepted = 1.000
Weighting Completed, fuzzy_edge=0
Weight at 0.000000 0.000000 is 134.929016
write to SEXTANS-A_92178.fits
write weights to SEXTANS-A_92178.wt.fits
STDERR ****************************
Exit Code: 0
LMTOY>> Some NEMO post-processing
### nemo Debug Info: FITS file: Image size 55 55 689
### Warning [fitsccd]: Setting map minimum from 0 to -2.73791
### Warning [fitsccd]: Setting map maximum from 0 to 2.69641
### nemo Debug Info: There were 641459 blank values in the image (30.776860 %)
### nemo Debug Info: FITS file: Image size 55 55
### Warning [fitsccd]: Setting map minimum from 0 to -2.25168
### Warning [fitsccd]: Setting map maximum from 0 to 144.544
### nemo Debug Info: There were no blank values set in the image
LMTOY>> STATS SEXTANS-A_92178.ccd centerbox robust
### Warning [ccdsub]: Sampling will be done
### Warning [ccdsub]: Attempting to fix the WCS
### nemo Debug Info: WCS Corner: 152.764 -4.68478 664985
Number of points : 540176
Min and Max : -0.908636 0.781877
Mean and dispersion : -0.000186 0.105687
Skewness and kurtosis : -0.000080 0.917672
Sum and Sum*Dx*Dy*Dz* : -100.295281 -0.237827
Points per beam (map) : 1
N Robust : 530758
Mean Robust : -0.000178
Sigma Robust : 0.097141
Median Robust : 0.000022
0/540176 out-of-range points discarded
LMTOY>> STATS SEXTANS-A_92178.wt.ccd centerbox robust
### Warning [ccdsub]: Sampling will be done
### Warning [ccdsub]: Attempting to fix the WCS
### nemo Debug Info: WCS Corner: 152.764 -4.68478 0
Number of points : 784
Min and Max : 16.064152 144.543564
Mean and dispersion : 91.624030 31.755255
Skewness and kurtosis : -0.261786 -0.884916
Sum and Sum*Dx*Dy* : 71833.239668 -0.167666
Points per beam (map) : 1
N Robust : 784
Mean Robust : 91.624030
Sigma Robust : 31.755255
Median Robust : 93.987137
0/784 out-of-range points discarded
### nemo Debug Info: Keeping 55*55*689 cube
### Warning [ccdfits]: Replacing header from SEXTANS-A_92178.wt.fits
SLABS: [[-35,215],[415,665]] == -35,215,415,665
### Warning [ccdslice]: axis=1 not fully supported yet
### nemo Debug Info: Axis: 689 0 664985 -1015.92
### nemo Debug Info: Axis min/max: 664985 -33968.8
### nemo Debug Info: slab -35 215 -> 689 442
### nemo Debug Info: slab 415 665 -> 246 0
### nemo Debug Info: Total planes: 495
### Warning [ccdslice]: Code not converted to fix reference pixel value
### Warning [ccdfits]: Replacing header from SEXTANS-A_92178.wt.fits
### Warning [ccdfits]: Replacing header from SEXTANS-A_92178.wt.fits
### Warning [ccdfits]: Replacing header from SEXTANS-A_92178.fits
[0;31mQAC_STATS: SEXTANS-A_92178-full -0.000105441 0.199212 -2.73791 2.69641 -152.127 -0.00075392[0m
### Warning [ccdsub]: Sampling will be done
### Warning [ccdsub]: Attempting to fix the WCS
### nemo Debug Info: WCS Corner: 152.764 -4.68478 664985
[0;31mQAC_STATS: SEXTANS-A_92178-cent -0.000185671 0.105687 -0.908636 0.781877 -100.295 -0.00226389[0m
### nemo Debug Info: FITS file: Image size 55 55 689
### Warning [fitsccd]: Setting map minimum from 0 to -0.0547278
### Warning [fitsccd]: Setting map maximum from 0 to 0.049264
### nemo Debug Info: There were no blank values set in the image
spectab : # 27 27 689 min/mean/sig/max -0.260948 -0.00120787 0.0819173 0.293351 -1.80658e-05 0.114884 0.991676
specstab: # 27 27 689 min/mean/sig/max -0.0239794 -2.89124e-05 0.00856122 0.0236339 -3.00171e-05 0.00348151 0.287552
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in
f = aplpy.FITSFigure(fitsfile)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper
return f(*args, **kwargs)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__
self._get_hdu(data, hdu, north, convention=convention,
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu
raise IOError("File not found: " + filename)
OSError: File not found: SEXTANS-A_92178.mom0.fits
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in
f = aplpy.FITSFigure(fitsfile)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper
return f(*args, **kwargs)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__
self._get_hdu(data, hdu, north, convention=convention,
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu
raise IOError("File not found: " + filename)
OSError: File not found: SEXTANS-A_92178.mom1.fits
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in
f = aplpy.FITSFigure(fitsfile)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper
return f(*args, **kwargs)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__
self._get_hdu(data, hdu, north, convention=convention,
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu
raise IOError("File not found: " + filename)
OSError: File not found: SEXTANS-A_92178.mom2.fits
INFO: Auto-setting vmin to -1.598e+01 [aplpy.core]
INFO: Auto-setting vmax to 1.595e+02 [aplpy.core]
INFO: Auto-setting vmin to -1.598e+01 [aplpy.core]
INFO: Auto-setting vmax to 1.595e+02 [aplpy.core]
Writing SEXTANS-A_92178.wt.png
INFO: Auto-setting vmin to -1.856e+01 [aplpy.core]
INFO: Auto-setting vmax to 2.060e+02 [aplpy.core]
INFO: Auto-setting vmin to -1.856e+01 [aplpy.core]
INFO: Auto-setting vmax to 2.060e+02 [aplpy.core]
Writing SEXTANS-A_92178.wt2.png
INFO: Auto-setting vmin to -1.088e+04 [aplpy.core]
INFO: Auto-setting vmax to 1.208e+05 [aplpy.core]
INFO: Auto-setting vmin to -1.088e+04 [aplpy.core]
INFO: Auto-setting vmax to 1.208e+05 [aplpy.core]
Writing SEXTANS-A_92178.wt3.png
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in
f = aplpy.FITSFigure(fitsfile)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper
return f(*args, **kwargs)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__
self._get_hdu(data, hdu, north, convention=convention,
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu
raise IOError("File not found: " + filename)
OSError: File not found: SEXTANS-A_92178.wtn.fits
INFO: Auto-setting vmin to -1.120e-01 [aplpy.core]
INFO: Auto-setting vmax to 1.243e+00 [aplpy.core]
INFO: Auto-setting vmin to -1.120e-01 [aplpy.core]
INFO: Auto-setting vmax to 1.243e+00 [aplpy.core]
Writing SEXTANS-A_92178.wtr.png
WARNING: FITSFixedWarning: RADECSYS= 'FK5 ' /
the RADECSYS keyword is deprecated, use RADESYSa. [astropy.wcs.wcs]
INFO: Setting slices=[0] [aplpy.core]
INFO: Auto-setting vmin to -4.563e+03 [aplpy.core]
INFO: Auto-setting vmax to 4.769e+03 [aplpy.core]
INFO: Auto-setting vmin to -4.563e+03 [aplpy.core]
INFO: Auto-setting vmax to 4.769e+03 [aplpy.core]
Writing SEXTANS-A_92178.mom0.png
LMTOY>> Created SEXTANS-A_92178.nf.fits and SEXTANS-A_92178.nfs.fits
LMTOY>> ADMIT post-processing
LMTOY>> lmtoy_admit: 31-oct-2021
/lma1/teuben/lmtoy/examples/lmtoy_admit.sh: line 33: export: `SEXTANS-A_92178.nfs.fits': not a valid identifier
No PDIR directory used, all work in the current directory
ADMIT = /lma1/teuben/lmtoy/admit
version = 1.0.8.5
CASA_PATH = /n/astromake/opt/casa/58 linux admit lma.astro.umd.edu
CASA_ROOT = /n/astromake/opt/casa/58
prefix = /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7
version = 5.8.0-rel-109
revision = 1
Trying CASA6, no worries if this fails
Traceback (most recent call last):
File "", line 1, in
ImportError: No module named casatools
LMTOY>> ADMIT post-processing
### (1/1) : processing SEXTANS-A_92178.nfs.fits
SEXTANS-A_92178.nfs.fits [55, 55, 689] SEXTANS-A 152.7838 -4.704639 0.0006649848 0.008
/lma1/teuben/lmtoy/admit/admit/test/admit1.py --basename x SEXTANS-A_92178.nfs.fits
110.034u 3.663s 2:11.23 86.6% 0+0k 7456+129608io 0pf+0w
Logfile: SEXTANS-A_92178.nfs.fits.log
LMTOY>> lmtoy_admit: 31-oct-2021
/lma1/teuben/lmtoy/examples/lmtoy_admit.sh: line 33: export: `SEXTANS-A_92178.nf.fits': not a valid identifier
No PDIR directory used, all work in the current directory
ADMIT = /lma1/teuben/lmtoy/admit
version = 1.0.8.5
CASA_PATH = /n/astromake/opt/casa/58 linux admit lma.astro.umd.edu
CASA_ROOT = /n/astromake/opt/casa/58
prefix = /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7
version = 5.8.0-rel-109
revision = 1
Trying CASA6, no worries if this fails
Traceback (most recent call last):
File "", line 1, in
ImportError: No module named casatools
LMTOY>> ADMIT post-processing
Found 33 Xvfb
1352627 Sl Xvfb
1350915 Sl Xvfb
1350224 Sl Xvfb
1349440 Sl Xvfb
### (1/1) : processing SEXTANS-A_92178.nf.fits
SEXTANS-A_92178.nf.fits [55, 55, 689] SEXTANS-A 152.7838 -4.704639 0.0006649848 0.008
/lma1/teuben/lmtoy/admit/admit/test/admit1.py --basename x SEXTANS-A_92178.nf.fits
50.877u 1.995s 1:04.21 82.3% 0+0k 312+73288io 0pf+0w
Logfile: SEXTANS-A_92178.nf.fits.log
LMTOY>> Created SEXTANS-A_92178.fits and SEXTANS-A_92178.wt.fits
LMTOY>> Parameter file used: lmtoy_92178.rc
LMTOY>> Making summary index.html:
Making index.html for obsnum=92178
SEXTANS-A_92178_?
SEXTANS-A_92178_?_specviews
SEXTANS-A_92178_?_specpoint
Writing index.html
Writing index_pipeline.html
cp: cannot stat 'SEXTANS-A_92178_?_specviews.1.png': No such file or directory