LMTOY>> seq_pipeline: 2-feb-2022
LMTOY>> READING lmtoy_functions 24-dec-2021 via /lma1/teuben/lmtoy/examples/seq_pipeline.sh
Working directory ./2018-S1-MU-64/92787
LMTOY>> Hang on, creating a bootstrap lmtoy_92787.rc from path=/n/lma1/lmt/data_lmt/
#
# version=2-feb-2022
# ifproc="/n/lma1/lmt/data_lmt//ifproc/ifproc_2020-03-19_092787_00_0001.nc"
date_obs="2020-03-19T03:46:40"
# skytime=1003.92 sec
# inttime=624.04 sec
obsnum="92787"
calobsnum="92786"
obspgm="Map"
obsgoal="Science"
ProjectId="2018-S1-MU-64"
# SkyOff=432 0
# HPBW=12 arcsec
# XYLength=120 120 arcsec
# XYRamp=0 0 arcsec
# XYoff=0 0 arcsec
# XYstep=1 0.4
numbands=1
vlsr=315 # km/s
skyfreq=115.14259436464813 # GHz
restfreq=115.271204 # Ghz
src="SEXTANS-A"
resolution=11 # arcsec
cell=5.5 # arcsec
x_extent=120 # arcsec
y_extent=120 # arcsec
instrument="SEQ"
#
LMTOY>> this is your startup lmtoy_92787.rc file:
# seq_pipeline: 2-feb-2022
# DATE: 2022-02-03T22:29:43.711175538
# obsnum=92787
# Using ifproc=/n/lma1/lmt/data_lmt//ifproc/ifproc_2020-03-19_092787_00_0001.nc
# path=/n/lma1/lmt/data_lmt/
#
# version=2-feb-2022
# ifproc="/n/lma1/lmt/data_lmt//ifproc/ifproc_2020-03-19_092787_00_0001.nc"
date_obs="2020-03-19T03:46:40"
# skytime=1003.92 sec
# inttime=624.04 sec
obsnum="92787"
calobsnum="92786"
obspgm="Map"
obsgoal="Science"
ProjectId="2018-S1-MU-64"
# SkyOff=432 0
# HPBW=12 arcsec
# XYLength=120 120 arcsec
# XYRamp=0 0 arcsec
# XYoff=0 0 arcsec
# XYstep=1 0.4
numbands=1
vlsr=315 # km/s
skyfreq=115.14259436464813 # GHz
restfreq=115.271204 # Ghz
src="SEXTANS-A"
resolution=11 # arcsec
cell=5.5 # arcsec
x_extent=120 # arcsec
y_extent=120 # arcsec
instrument="SEQ"
#
# based on vlsr=315, dv=100, dw=250
b_order=0
b_regions=[[-35,215],[415,665]]
l_regions=[[215,415]]
slice=[-35,665]
v_range=215,415
pix_list=0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15
rmax=3
otf_a=1.1
otf_b=4.75
otf_c=2
sample=-1
otf_cal=0
edge=0
LMTOY>> Sleeping for 5 seconds, you can abort, edit lmtoy_92787.rc, then continuing
LMTOY>> process_otf_map2 in 2 seconds
{'--b_order': '0',
'--b_regions': '[[-35,215],[415,665]]',
'--bank': '0',
'--eliminate_list': '0',
'--help': False,
'--l_regions': '[[215,415]]',
'--obsnum': '92787',
'--output': 'SEXTANS-A_92787.nc',
'--path': '/n/lma1/lmt/data_lmt/',
'--pix_list': '0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15',
'--restfreq': None,
'--sample': None,
'--save_tsys': False,
'--slice': '[-35,665]',
'--stype': '2',
'--tsys': '250.0',
'--use_cal': True,
'--use_otf_cal': False,
'--x_axis': 'VLSR'}
program process_otf_map options
use_cal = True
pix_list = [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]
b_order = 0
eliminate_list = [0]
slice = [-35, 665]
x_axis = VLSR
output_file_name = SEXTANS-A_92787.nc
obsnum = 92787
data_path = /n/lma1/lmt/data_lmt/
stype = 2
b_regions = [[-35, 215], [415, 665]]
tsys = 250.0
l_regions = [[215, 415]]
path = /n/lma1/lmt/data_lmt/
bank = 0
use_otf_cal = False
output = SEXTANS-A_92787.nc
Warning: 1/4 missing roach files for obsnum=92787 in /n/lma1/lmt/data_lmt/spectrometer
2020-03-19T03:46:40 begin /n/lma1/lmt/data_lmt/ifproc/ifproc_2020-03-19_092787_00_0001.nc
2020-03-19T04:03:24 end /n/lma1/lmt/data_lmt/ifproc/ifproc_2020-03-19_092787_00_0001.nc
BufPos 1 14.0 sec 92787
BufPos 0 15.6 sec 92787
BufPos 1 23.7 sec 92787
BufPos 0 15.8 sec 92787
BufPos 1 23.4 sec 92787
BufPos 0 16.2 sec 92787
BufPos 1 24.0 sec 92787
BufPos 0 16.0 sec 92787
BufPos 1 22.2 sec 92787
BufPos 0 15.0 sec 92787
BufPos 1 22.4 sec 92787
BufPos 0 15.0 sec 92787
BufPos 1 23.8 sec 92787
BufPos 0 15.2 sec 92787
BufPos 1 23.7 sec 92787
BufPos 0 15.5 sec 92787
BufPos 1 22.0 sec 92787
BufPos 0 15.6 sec 92787
BufPos 1 23.4 sec 92787
BufPos 0 15.5 sec 92787
BufPos 1 22.0 sec 92787
BufPos 0 15.1 sec 92787
BufPos 1 22.7 sec 92787
BufPos 0 15.2 sec 92787
BufPos 1 23.5 sec 92787
BufPos 0 16.1 sec 92787
BufPos 1 22.7 sec 92787
BufPos 0 15.5 sec 92787
BufPos 1 23.2 sec 92787
BufPos 0 16.9 sec 92787
BufPos 1 24.0 sec 92787
BufPos 0 15.5 sec 92787
BufPos 1 22.2 sec 92787
BufPos 0 15.9 sec 92787
BufPos 1 22.7 sec 92787
BufPos 0 15.5 sec 92787
BufPos 1 23.4 sec 92787
BufPos 0 15.0 sec 92787
BufPos 1 23.6 sec 92787
BufPos 0 15.6 sec 92787
BufPos 1 23.8 sec 92787
BufPos 0 15.1 sec 92787
BufPos 1 23.5 sec 92787
BufPos 0 14.9 sec 92787
BufPos 1 22.3 sec 92787
BufPos 0 15.9 sec 92787
BufPos 1 24.0 sec 92787
BufPos 0 15.6 sec 92787
BufPos 1 23.3 sec 92787
BufPos 0 15.6 sec 92787
BufPos 1 23.5 sec 92787
BufPos 0 15.2 sec 92787
BufPos 1 7.1 sec 92787
before read npix
from pixels npix = 16
from xlen npix = 16
TRACKING Sequoia PIXEL 10
Map Parameters: Ra Continuous
HPBW= 12.0 XLength= 120.0 YLength= 120.0 XStep= 1.00 YStep= 0.40
/n/lma1/lmt/data_lmt/ifproc/ifproc_2020-03-19_092787_00_0001.nc does not have bs parameters
92787 is a Map observation
get chop
'Data.Msip1mm.BeamChopperActPos'
no chop
2020-03-19T03:46:15 begin /n/lma1/lmt/data_lmt/ifproc/ifproc_2020-03-19_092786_00_0001.nc
2020-03-19T03:46:23 end /n/lma1/lmt/data_lmt/ifproc/ifproc_2020-03-19_092786_00_0001.nc
BufPos 3 4.8 sec 92786
BufPos 2 2.6 sec 92786
before read npix
from pixels npix = 16
from xlen npix = 16
TRACKING Sequoia PIXEL 10
/n/lma1/lmt/data_lmt/ifproc/ifproc_2020-03-19_092786_00_0001.nc does not have map parameters
/n/lma1/lmt/data_lmt/ifproc/ifproc_2020-03-19_092786_00_0001.nc does not have bs parameters
92786 is a Cal observation
get chop cal
'Data.Msip1mm.BeamChopperActPos'
no chop cal
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach0/roach0_92787_0_1_SEXTANS-A_2020-03-19_074634.nc nspec,nchan=26172,2048
r:0 inp:0 pix:0 time_offset:-0.030000
r:0 inp:1 pix:1 time_offset:-0.030000
r:0 inp:2 pix:2 time_offset:-0.030000
r:0 inp:3 pix:3 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach1/roach1_92787_0_1_SEXTANS-A_2020-03-19_074634.nc nspec,nchan=26216,2048
r:1 inp:0 pix:4 time_offset:-0.030000
r:1 inp:1 pix:5 time_offset:-0.030000
r:1 inp:2 pix:6 time_offset:-0.030000
r:1 inp:3 pix:7 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach2/roach2_92787_0_1_SEXTANS-A_2020-03-19_074634.nc nspec,nchan=26304,2048
r:2 inp:0 pix:8 time_offset:-0.030000
r:2 inp:1 pix:9 time_offset:-0.030000
r:2 inp:2 pix:10 time_offset:-0.030000
r:2 inp:3 pix:11 time_offset:-0.030000
RESTFREQ 115.271 GHz
Warning: 1/4 missing roach files for obsnum=92786 in /n/lma1/lmt/data_lmt/spectrometer
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach0/roach0_92786_0_1_SEXTANS-A_2020-03-19_074615.nc nspec,nchan=224,2048
r:0 inp:0 pix:0 time_offset:-0.030000
r:0 inp:1 pix:1 time_offset:-0.030000
r:0 inp:2 pix:2 time_offset:-0.030000
r:0 inp:3 pix:3 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach1/roach1_92786_0_1_SEXTANS-A_2020-03-19_074615.nc nspec,nchan=228,2048
r:1 inp:0 pix:4 time_offset:-0.030000
r:1 inp:1 pix:5 time_offset:-0.030000
r:1 inp:2 pix:6 time_offset:-0.030000
r:1 inp:3 pix:7 time_offset:-0.030000
read_roach /n/lma1/lmt/data_lmt/spectrometer/roach2/roach2_92786_0_1_SEXTANS-A_2020-03-19_074615.nc nspec,nchan=228,2048
r:2 inp:0 pix:8 time_offset:-0.030000
r:2 inp:1 pix:9 time_offset:-0.030000
r:2 inp:2 pix:10 time_offset:-0.030000
r:2 inp:3 pix:11 time_offset:-0.030000
TSYS[0] = 269.223 +/- 16.4914 (2048 channels)
TSYS[1] = 227.716 +/- 12.5631 (2048 channels)
TSYS[2] = 280.923 +/- 18.0223 (2048 channels)
TSYS[3] = 218.791 +/- 12.6635 (2048 channels)
TSYS[4] = 234.576 +/- 15.0532 (2048 channels)
TSYS[5] = 228.312 +/- 14.213 (2048 channels)
TSYS[6] = 262.897 +/- 20.0447 (2048 channels)
TSYS[7] = 224.898 +/- 12.2129 (2048 channels)
TSYS[8] = 219.77 +/- 13.185 (2048 channels)
TSYS[9] = 229.949 +/- 12.579 (2048 channels)
TSYS[10] = 224.685 +/- 13.4024 (2048 channels)
TSYS[11] = 228.27 +/- 13.2254 (2048 channels)
Spectral Band velocity range: -724.795 1354.8 km/s
Total Number of OTF Spectra = 42304
NSPEC: 42304
NCHAN: 689
FAST_NC: True
Looping over 16 pixel list [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]:
Processing 1 CAL's for Tsys
Pix Nspec Mean Std MAD_std Min Max RMS_max Warnings
TSYS[0] slice: 269.456 (6.02094) minmax: 258.14 280.496
0 2641 -0.001 1.393 1.392 -6.656 7.087 1.392 1.538
TSYS[1] slice: 228.141 (4.65319) minmax: 218.993 237.536
1 2641 -0.001 1.181 1.179 -5.561 5.539 1.180 1.300
TSYS[2] slice: 280.969 (5.82706) minmax: 269.08 293.111
2 2641 -0.001 1.451 1.451 -6.747 8.318 1.449 1.621
TSYS[3] slice: 218.697 (4.46379) minmax: 210.213 227.517
3 2641 -0.001 1.131 1.131 -5.270 5.609 1.130 1.252
TSYS[4] slice: 235.86 (5.27486) minmax: 225.634 246.068
4 2647 -0.000 1.217 1.216 -6.087 6.092 1.215 1.338
TSYS[5] slice: 228.521 (4.80306) minmax: 220.45 237.888
5 2647 -0.000 1.184 1.182 -5.720 5.840 1.183 1.322
TSYS[6] slice: 263.751 (6.43218) minmax: 250.555 275.072
6 2647 -0.000 1.363 1.361 -6.512 6.656 1.360 1.530
TSYS[7] slice: 225.364 (4.38161) minmax: 216.798 233.067
7 2647 0.001 1.165 1.165 -5.443 6.150 1.163 1.301
TSYS[8] slice: 220.233 (4.71274) minmax: 211.486 228.63
8 2647 0.000 1.140 1.139 -5.557 5.335 1.139 1.268
TSYS[9] slice: 230.161 (4.29474) minmax: 221.599 239.286
9 2647 -0.001 1.190 1.189 -5.789 6.206 1.188 1.324
TSYS[10] slice: 225.341 (5.12651) minmax: 215.713 235.01
10 2647 -0.000 1.164 1.163 -5.786 5.632 1.162 1.301
TSYS[11] slice: 228.189 (4.33674) minmax: 219.973 236.746
11 2647 -0.001 1.180 1.179 -5.720 5.734 1.179 1.309
TSYS[12] slice: 269.456 (6.02094) minmax: 258.14 280.496
12 2641 -0.001 1.393 1.392 -6.656 7.087 1.392 1.538
TSYS[13] slice: 269.456 (6.02094) minmax: 258.14 280.496
13 2641 -0.001 1.393 1.392 -6.656 7.087 1.392 1.538
TSYS[14] slice: 269.456 (6.02094) minmax: 258.14 280.496
14 2641 -0.001 1.393 1.392 -6.656 7.087 1.392 1.538 Traceback (most recent call last):
File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/ifproc/ifproc.py", line 536, in __init__
self.chop = self.nc.variables['Data.Msip1mm.BeamChopperActPos'][:]
KeyError: 'Data.Msip1mm.BeamChopperActPos'
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/ifproc/ifproc.py", line 667, in __init__
self.chop = self.nc.variables['Data.Msip1mm.BeamChopperActPos'][:]
KeyError: 'Data.Msip1mm.BeamChopperActPos'
/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray.
a.partition(kth, axis=axis, kind=kind, order=order)
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:547: RuntimeWarning: invalid value encountered in true_divide
self.tsys_spectrum = 280 * sky_spectrum / (hot_spectrum -
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:547: RuntimeWarning: divide by zero encountered in true_divide
self.tsys_spectrum = 280 * sky_spectrum / (hot_spectrum -
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:392: RuntimeWarning: invalid value encountered in true_divide
spectra.append((self.raw_spec[i,:] - ref) / ref)
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:392: RuntimeWarning: divide by zero encountered in true_divide
spectra.append((self.raw_spec[i,:] - ref) / ref)
/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:434: RuntimeWarning: invalid value encountered in multiply
self.reduced_spectra = np.array(spectra) * tsys_spectrum
TSYS[15] slice: 269.456 (6.02094) minmax: 258.14 280.496
15 2641 -0.001 1.393 1.392 -6.656 7.087 1.392 1.538
CPU TIME: 21.7311 sec
CPU TIME: 21.7925 sec
Warnings:
*P ratio: ratio of std/mad too high for data
*M ratio: ratio of std/mad too high for RMS
X-range: -134.153 95.845 Y-range: -109.899 122.782 arcsec
Written SEXTANS-A_92787.nc
LMTOY>> view_spec_file
{'--help': False,
'--input': 'SEXTANS-A_92787.nc',
'--pix_list': '0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15',
'--plot_range': '-1,3',
'--plots': 'SEXTANS-A_92787_specviews',
'--rms_cut': '-4',
'--show_pixel': None,
'--skip_tsys': False}
SLR Plots initialized with 1 method=SEXTANS-A_92787_specviews
Max sequence=2647
Plots saving in SEXTANS-A_92787_specviews.1.png
Plots saving in SEXTANS-A_92787_specviews.2.png
Plots saving in SEXTANS-A_92787_specviews.3.png
Plots saving in SEXTANS-A_92787_specviews.4.png
Plots saving in SEXTANS-A_92787_specviews.5.png
NEW TSYS PIC
SHAPE (1, 16, 689)
PIXEL: 0 [ 0 1 2 ... 2638 2639 2640]
PIXEL: 1 [2641 2642 2643 ... 5279 5280 5281]
PIXEL: 2 [5282 5283 5284 ... 7920 7921 7922]
PIXEL: 3 [ 7923 7924 7925 ... 10561 10562 10563]
PIXEL: 4 [10564 10565 10566 ... 13208 13209 13210]
PIXEL: 5 [13211 13212 13213 ... 15855 15856 15857]
PIXEL: 6 [15858 15859 15860 ... 18502 18503 18504]
PIXEL: 7 [18505 18506 18507 ... 21149 21150 21151]
PIXEL: 8 [21152 21153 21154 ... 23796 23797 23798]
PIXEL: 9 [23799 23800 23801 ... 26443 26444 26445]
PIXEL: 10 [26446 26447 26448 ... 29090 29091 29092]
PIXEL: 11 [29093 29094 29095 ... 31737 31738 31739]
PIXEL: 12 [31740 31741 31742 ... 34378 34379 34380]
PIXEL: 13 [34381 34382 34383 ... 37019 37020 37021]
PIXEL: 14 [37022 37023 37024 ... 39660 39661 39662]
PIXEL: 15 [39663 39664 39665 ... 42301 42302 42303]
Plots saving in SEXTANS-A_92787_specviews.6.png
/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray.
a.partition(kth, axis=axis, kind=kind, order=order)
SLR Plots initialized with 3 method=SEXTANS-A_92787_specpoint,png,1
MAD: 0 1.3915526 0.04466483827229061 1.570211920571157
MAD: 1 1.1799107 0.03925747928314976 1.3369405769226381
MAD: 2 1.4475505 0.04564874961376952 1.6301455336571045
MAD: 3 1.13046 0.03570235504498769 1.2732694440599557
MAD: 4 1.2153833 0.03838544433454963 1.3689250685827052
MAD: 5 1.1825883 0.038376607336691904 1.3360947681986963
MAD: 6 1.3591954 0.044639564458417526 1.5377536094343172
MAD: 7 1.16256 0.037321293052522596 1.3118451583245923
MAD: 8 1.1380404 0.035964106921533456 1.2818968510793833
MAD: 9 1.1878108 0.03829194889721491 1.3409785742067186
MAD: 10 1.1613084 0.03956182548936975 1.3195557097409873
MAD: 11 1.1777637 0.03852895717975905 1.3318795292042658
MAD: 12 1.3915526 0.04466483827229061 1.570211920571157
MAD: 13 1.3915526 0.04466483827229061 1.570211920571157
MAD: 14 1.3915526 0.04466483827229061 1.570211920571157
MAD: 15 1.3915526 0.04466483827229061 1.570211920571157
Plots saving in SEXTANS-A_92787_specpoint.1.png
/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray.
a.partition(kth, axis=axis, kind=kind, order=order)
SLR Plots initialized with 3 method=SEXTANS-A_92787_specpoint,png,2
MAD: 0 1.3915526 0.04466483827229061 1.570211920571157
MAD: 1 1.1799107 0.03925747928314976 1.3369405769226381
MAD: 2 1.4475505 0.04564874961376952 1.6301455336571045
MAD: 3 1.13046 0.03570235504498769 1.2732694440599557
MAD: 4 1.2153833 0.03838544433454963 1.3689250685827052
MAD: 5 1.1825883 0.038376607336691904 1.3360947681986963
MAD: 6 1.3591954 0.044639564458417526 1.5377536094343172
MAD: 7 1.16256 0.037321293052522596 1.3118451583245923
MAD: 8 1.1380404 0.035964106921533456 1.2818968510793833
MAD: 9 1.1878108 0.03829194889721491 1.3409785742067186
MAD: 10 1.1613084 0.03956182548936975 1.3195557097409873
MAD: 11 1.1777637 0.03852895717975905 1.3318795292042658
MAD: 12 1.3915526 0.04466483827229061 1.570211920571157
MAD: 13 1.3915526 0.04466483827229061 1.570211920571157
MAD: 14 1.3915526 0.04466483827229061 1.570211920571157
MAD: 15 1.3915526 0.04466483827229061 1.570211920571157
Plots saving in SEXTANS-A_92787_specpoint.2.png
LMTOY>> make_spec_fits (waterfall)
pix [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]
Min nsamp 2641
Binning [1, 1]
FITS file will be 2641 x 689 x 16
Written waterfall cube to SEXTANS-A_92787.wf.fits
pix [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]
Min nsamp 2641
Binning [10, 1]
FITS file will be 264 x 689 x 16
New shape: (16, 689, 264)
Written waterfall cube to SEXTANS-A_92787.wf10.fits
LMTOY>> grid_data
{'--cell': '5.5',
'--edge': '0',
'--help': False,
'--input': 'SEXTANS-A_92787.nc',
'--n_samples': '256',
'--noise_sigma': '1',
'--otf_a': '1.1',
'--otf_b': '4.75',
'--otf_c': '2',
'--otf_select': '1',
'--output': 'SEXTANS-A_92787.fits',
'--pix_list': '0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15',
'--program_path': 'spec_driver_fits',
'--resolution': '11',
'--rmax': '3',
'--rms_cut': '-4',
'--sample': '-1',
'--weight': 'SEXTANS-A_92787.wt.fits',
'--x_extent': '120',
'--y_extent': '120'}
STDOUT ****************************
spec_driver_fits LMTSLR 26-jan-2022
CMD: spec_driver_fits -i SEXTANS-A_92787.nc -o SEXTANS-A_92787.fits -w SEXTANS-A_92787.wt.fits -l 11 -c 5.5 -u [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15] -z -4 -s 1 -x 120 -y 120 -f 1 -r 3 -n 256 -0 1.1 -1 4.75 -2 2 -b -1 -e 0
file list=SEXTANS-A_92787.nc
DEBUG:5.5
sample_list=-1
Warning: sample list is not a multiple of 3
nsamples=1
Processing 1 SpecFiles:
Opening SpecFile file SEXTANS-A_92787.nc
file: SEXTANS-A_92787.nc nspec= 42304 nchan= 689
SpecFile version 6-mar-2021
X-range: -134.153 95.845 Y-range: -109.899 122.782 arcsec
X-ramp: -50.7531 12.445 Y-ramp: -26.4985 39.3822 arcsec
MapSize: 229.998 x 232.681 arcsec
92787
SEXTANS-A
DATE-OBS 2020-03-19T03:46:40
CF.n_cells= 7 delta=0.129412 cell=5.5 resol=11 oft_select=1
C-AXIS 2 starts at 664.985
C-AXIS 1 starts at -121
C-AXIS 0 starts at -121
P-AXIS 1 starts at -121
P-AXIS 0 starts at -121
P-AXIS 1 starts at -121
P-AXIS 0 starts at -121
WARNING fuzzy_edge=0
pixel: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
used?: 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
rms_stats: n=42304 rms_cutoff=-4
Cube Completed, 42303/42304 Spectra accepted = 1.000
Weighting Completed, fuzzy_edge=0
Weight at 0.000000 0.000000 is 71.103401
write to SEXTANS-A_92787.fits
write weights to SEXTANS-A_92787.wt.fits
STDERR ****************************
Exit Code: 0
LMTOY>> Some NEMO post-processing
### nemo Debug Info: FITS file: Image size 45 45 689
### Warning [fitsccd]: Setting map minimum from 0 to -3.16692
### Warning [fitsccd]: Setting map maximum from 0 to 2.77294
### nemo Debug Info: There were 334165 blank values in the image (23.950617 %)
### nemo Debug Info: FITS file: Image size 45 45
### Warning [fitsccd]: Setting map minimum from 0 to -1.10298
### Warning [fitsccd]: Setting map maximum from 0 to 85.8148
### nemo Debug Info: There were no blank values set in the image
LMTOY>> STATS SEXTANS-A_92787.ccd centerbox robust
### Warning [ccdsub]: Sampling will be done
### Warning [ccdsub]: Attempting to fix the WCS
### nemo Debug Info: WCS Corner: 152.769 -4.68936 664985
Number of points : 396864
Min and Max : -1.075850 1.366486
Mean and dispersion : -0.000244 0.151607
Skewness and kurtosis : 0.001054 1.222949
Sum and Sum*Dx*Dy*Dz* : -96.947098 -0.229887
Points per beam (map) : 1
N Robust : 388677
Mean Robust : -0.000281
Sigma Robust : 0.136922
Median Robust : -0.000421
0/396864 out-of-range points discarded
LMTOY>> STATS SEXTANS-A_92787.wt.ccd centerbox robust
### Warning [ccdsub]: Sampling will be done
### Warning [ccdsub]: Attempting to fix the WCS
### nemo Debug Info: WCS Corner: 152.769 -4.68936 0
Number of points : 576
Min and Max : 8.046683 85.814781
Mean and dispersion : 47.033458 18.880006
Skewness and kurtosis : 0.030654 -0.923403
Sum and Sum*Dx*Dy* : 27091.271970 -0.063234
Points per beam (map) : 1
N Robust : 576
Mean Robust : 47.033458
Sigma Robust : 18.880006
Median Robust : 47.253151
0/576 out-of-range points discarded
### nemo Debug Info: Keeping 45*45*689 cube
### Warning [ccdfits]: Replacing header from SEXTANS-A_92787.wt.fits
SLABS: [[-35,215],[415,665]] == -35,215,415,665
### Warning [ccdslice]: axis=1 not fully supported yet
### nemo Debug Info: Axis: 689 0 664985 -1015.92
### nemo Debug Info: Axis min/max: 664985 -33968.8
### nemo Debug Info: slab -35 215 -> 689 442
### nemo Debug Info: slab 415 665 -> 246 0
### nemo Debug Info: Total planes: 495
### Warning [ccdslice]: Code not converted to fix reference pixel value
### Warning [ccdfits]: Replacing header from SEXTANS-A_92787.wt.fits
### Warning [ccdfits]: Replacing header from SEXTANS-A_92787.wt.fits
### Warning [ccdfits]: Replacing header from SEXTANS-A_92787.fits
[0;31mQAC_STATS: SEXTANS-A_92787-full -0.000287323 0.263627 -3.16692 2.77294 -304.867 -0.00153441[0m
### Warning [ccdsub]: Sampling will be done
### Warning [ccdsub]: Attempting to fix the WCS
### nemo Debug Info: WCS Corner: 152.769 -4.68936 664985
[0;31mQAC_STATS: SEXTANS-A_92787-cent -0.000244283 0.151607 -1.07585 1.36649 -96.9471 -0.0020945[0m
### nemo Debug Info: FITS file: Image size 45 45 689
### Warning [fitsccd]: Setting map minimum from 0 to -0.0555891
### Warning [fitsccd]: Setting map maximum from 0 to 0.0539849
### nemo Debug Info: There were no blank values set in the image
spectab : # 22 22 689 min/mean/sig/max -0.368056 -0.00237816 0.109641 0.314154 9.2221e-05 0.152667 0.984592
specstab: # 22 22 689 min/mean/sig/max -0.0300036 -0.00140392 0.0119663 0.0302803 6.41319e-06 0.00509 0.300775
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in
f = aplpy.FITSFigure(fitsfile)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper
return f(*args, **kwargs)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__
self._get_hdu(data, hdu, north, convention=convention,
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu
raise IOError("File not found: " + filename)
OSError: File not found: SEXTANS-A_92787.mom0.fits
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in
f = aplpy.FITSFigure(fitsfile)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper
return f(*args, **kwargs)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__
self._get_hdu(data, hdu, north, convention=convention,
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu
raise IOError("File not found: " + filename)
OSError: File not found: SEXTANS-A_92787.mom1.fits
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in
f = aplpy.FITSFigure(fitsfile)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper
return f(*args, **kwargs)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__
self._get_hdu(data, hdu, north, convention=convention,
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu
raise IOError("File not found: " + filename)
OSError: File not found: SEXTANS-A_92787.mom2.fits
INFO: Auto-setting vmin to -9.070e+00 [aplpy.core]
INFO: Auto-setting vmax to 9.204e+01 [aplpy.core]
INFO: Auto-setting vmin to -9.070e+00 [aplpy.core]
INFO: Auto-setting vmax to 9.204e+01 [aplpy.core]
Writing SEXTANS-A_92787.wt.png
INFO: Auto-setting vmin to -1.063e+01 [aplpy.core]
INFO: Auto-setting vmax to 1.180e+02 [aplpy.core]
INFO: Auto-setting vmin to -1.063e+01 [aplpy.core]
INFO: Auto-setting vmax to 1.180e+02 [aplpy.core]
Writing SEXTANS-A_92787.wt2.png
INFO: Auto-setting vmin to -9.326e+04 [aplpy.core]
INFO: Auto-setting vmax to 1.035e+06 [aplpy.core]
INFO: Auto-setting vmin to -9.326e+04 [aplpy.core]
INFO: Auto-setting vmax to 1.035e+06 [aplpy.core]
Writing SEXTANS-A_92787.wt3.png
Traceback (most recent call last):
File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in
f = aplpy.FITSFigure(fitsfile)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper
return f(*args, **kwargs)
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__
self._get_hdu(data, hdu, north, convention=convention,
File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu
raise IOError("File not found: " + filename)
OSError: File not found: SEXTANS-A_92787.wtn.fits
INFO: Auto-setting vmin to -1.116e-01 [aplpy.core]
INFO: Auto-setting vmax to 1.239e+00 [aplpy.core]
INFO: Auto-setting vmin to -1.116e-01 [aplpy.core]
INFO: Auto-setting vmax to 1.239e+00 [aplpy.core]
Writing SEXTANS-A_92787.wtr.png
WARNING: FITSFixedWarning: RADECSYS= 'FK5 ' /
the RADECSYS keyword is deprecated, use RADESYSa. [astropy.wcs.wcs]
INFO: Setting slices=[0] [aplpy.core]
INFO: Auto-setting vmin to -6.032e+03 [aplpy.core]
INFO: Auto-setting vmax to 5.677e+03 [aplpy.core]
INFO: Auto-setting vmin to -6.032e+03 [aplpy.core]
INFO: Auto-setting vmax to 5.677e+03 [aplpy.core]
Writing SEXTANS-A_92787.mom0.png
LMTOY>> Created SEXTANS-A_92787.nf.fits and SEXTANS-A_92787.nfs.fits
LMTOY>> ADMIT post-processing
LMTOY>> lmtoy_admit: 31-oct-2021
/lma1/teuben/lmtoy/examples/lmtoy_admit.sh: line 33: export: `SEXTANS-A_92787.nfs.fits': not a valid identifier
No PDIR directory used, all work in the current directory
ADMIT = /lma1/teuben/lmtoy/admit
version = 1.0.8.5
CASA_PATH = /n/astromake/opt/casa/58 linux admit lma.astro.umd.edu
CASA_ROOT = /n/astromake/opt/casa/58
prefix = /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7
version = 5.8.0-rel-109
revision = 1
Trying CASA6, no worries if this fails
Traceback (most recent call last):
File "", line 1, in
ImportError: No module named casatools
LMTOY>> ADMIT post-processing
### (1/1) : processing SEXTANS-A_92787.nfs.fits
SEXTANS-A_92787.nfs.fits [45, 45, 689] SEXTANS-A 152.7838 -4.704639 0.0006649848 0.005
/lma1/teuben/lmtoy/admit/admit/test/admit1.py --basename x SEXTANS-A_92787.nfs.fits
102.150u 3.251s 2:03.53 85.3% 0+0k 12104+113696io 0pf+0w
Logfile: SEXTANS-A_92787.nfs.fits.log
LMTOY>> lmtoy_admit: 31-oct-2021
/lma1/teuben/lmtoy/examples/lmtoy_admit.sh: line 33: export: `SEXTANS-A_92787.nf.fits': not a valid identifier
No PDIR directory used, all work in the current directory
ADMIT = /lma1/teuben/lmtoy/admit
version = 1.0.8.5
CASA_PATH = /n/astromake/opt/casa/58 linux admit lma.astro.umd.edu
CASA_ROOT = /n/astromake/opt/casa/58
prefix = /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7
version = 5.8.0-rel-109
revision = 1
Trying CASA6, no worries if this fails
Traceback (most recent call last):
File "", line 1, in
ImportError: No module named casatools
LMTOY>> ADMIT post-processing
Found 33 Xvfb
2298314 Sl Xvfb
2297812 Sl Xvfb
1352627 Sl Xvfb
1350915 Sl Xvfb
### (1/1) : processing SEXTANS-A_92787.nf.fits
SEXTANS-A_92787.nf.fits [45, 45, 689] SEXTANS-A 152.7838 -4.704639 0.0006649848 0.005
/lma1/teuben/lmtoy/admit/admit/test/admit1.py --basename x SEXTANS-A_92787.nf.fits
54.102u 2.167s 1:07.36 83.5% 0+0k 312+62144io 0pf+0w
Logfile: SEXTANS-A_92787.nf.fits.log
LMTOY>> Created SEXTANS-A_92787.fits and SEXTANS-A_92787.wt.fits
LMTOY>> Parameter file used: lmtoy_92787.rc
LMTOY>> Making summary index.html:
Making index.html for obsnum=92787
SEXTANS-A_92787_?
SEXTANS-A_92787_?_specviews
SEXTANS-A_92787_?_specpoint
Writing index.html
Writing index_pipeline.html
cp: cannot stat 'SEXTANS-A_92787_?_specviews.1.png': No such file or directory