========================================= The start-up time of CASA may vary depending on whether the shared libraries are cached or not. ========================================= ]0;IPython: 2018ARSRCommissioning/71610IPython 5.1.0 -- An enhanced Interactive Python. CASA 5.8.0-109 -- Common Astronomy Software Applications Found an existing telemetry logfile: /home/teuben/.casa/casastats-580-109-1982ac1bc21613821e-20220204-015000.log Telemetry initialized. Telemetry will send anonymized usage statistics to NRAO. You can disable telemetry by adding the following line to your ~/.casarc file: EnableTelemetry: False Adding au casaVersion = 5.8.0-109 imported casatasks and tools using taskinit * The import of casa items did not complete. You may need to update the version of analysisUtils that you are using. See https://casaguides.nrao.edu/index.php/Analysis_Utilities au: 1.4901, casa: 5.8.0 QAC: Root /home/teuben/.casa/QAC QAC: Load contrib/tp2vis.py tp2vis for CASA5 [18-jun-2020 PJT] QAC: Skip distribute/tp2vis.py QAC: Skip tp2vis/tp2vis.py QAC: Load src/qac.py Loading QAC 27-oct-2020 QAC: Load src/ssc.py QAC: Load src/plot.py qac: version 27-oct-2020 qac_root: /home/teuben/.casa/QAC casa:5.8.0 data:/an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7/data ('QAC: ', None) --> CrashReporter initialized. WARNING: No ASAP; ASAPLineFinder cannot function. ('ADMIT4: Version ', '30-mar-2016') ('Removing previous results from ', 'rsr.71610.driver.sum.admit') ('Found parameter file ', 'rsr.71610.driver.sum.txt.apar') ('_ADMIT_ROOT=', '/lma1/teuben/lmtoy/admit') ADMIT basedir = /lma1/teuben/lmtoy/examples/2018ARSRCommissioning/71610/rsr.71610.driver.sum.admit ADMIT root = /lma1/teuben/lmtoy/admit ADMIT version = 1.0.8.5 ADMIT flowcount = 1 stale = 0 ('Starting a new ADMIT using ', 'rsr.71610.driver.sum.txt') ('Found parameter file ', 'rsr.71610.driver.sum.txt.apar') INFO : AT.py : Setting {'seed': -1, 'file': 'rsr.71610.driver.sum.txt'} for GenerateSpectrum_AT ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) INFO : AT.py : Setting 'csub' = [0, None] for LineSegment_AT ('PJT0 _taskid', -1) ('PJT0 _taskid', -1) INFO : AT.py : Setting 'csub' = [0, None] for LineID_AT INFO : AT.py : Setting 'vlsr' = 12387.0 for LineID_AT INFO : AT.py : Setting 'references' = etc/co_lines.list for LineID_AT INFO : Admit.py : ADMIT run() called [flowcount 1] INFO : INFO : INFO : Executing GenerateSpectrum_AT - '' (V1.0.0) INFO : INFO : INFO : Run using the following settings: INFO : nchan : 1000 INFO : file : rsr.71610.driver.sum.txt INFO : lines : [] INFO : hanning : False INFO : nspectra : 1 INFO : contin : 0.0 INFO : delta : 0.5 INFO : freq : 115.2712018 INFO : transitions : [] INFO : seed : -1 INFO : TIMING : CubeSpectrum ADMIT [ 1.91569800e+00 1.64394019e+09] TIMING : CubeSpectrum BEGIN [ 0. 0.] INFO : utils.py : OSTYPE: linux TIMING : CubeSpectrum start [ 2.40860000e-02 2.41417885e-02 1.40743359e+03 2.08609375e+02] ('READING spectrum from', 'rsr.71610.driver.sum.txt') Spectrum 1297 chans from 71.719531 to 112.219531: min/max = -0.003726 0.010268 TIMING : CubeSpectrum getspec [ 8.20950000e-02 8.23080540e-02 1.40743359e+03 2.08703125e+02] TIMING : CubeSpectrum open [ 1.19540000e-02 1.19841099e-02 1.40743359e+03 2.08703125e+02] TIMING : CubeSpectrum table [ 2.26320000e-01 2.48523951e-01 1.42861328e+03 2.27843750e+02] TIMING : CubeSpectrum done [ 1.32960000e-02 1.33409500e-02 1.42861328e+03 2.27843750e+02] TIMING : CubeSpectrum END [ 0.369769 0.39235187] INFO : AT.py : BDP_OUT[0] = CubeSpectrum_BDP Genspec.csp INFO : INFO : INFO : Executing LineSegment_AT - '' (V1.2.3) INFO : INFO : INFO : Run using the following settings: INFO : numsigma : 5.0 INFO : minchan : 4 INFO : edgechannels : 0 INFO : smooth : [] INFO : recalcnoise : False INFO : maxgap : 3 INFO : csub : [0, None] INFO : iterate : True INFO : segment : ADMIT INFO : TIMING : LineSegment ADMIT [ 2.34473600e+00 1.64394019e+09] TIMING : LineSegment BEGIN [ 0. 0.] TIMING : LineSegment start [ 2.39810000e-02 2.40540504e-02 1.42861328e+03 2.27843750e+02] DEBUG : ADMITSegmentFinder.py : MIN/MAX -0.00372604159761 / 0.0102678004086 DEBUG : ADMITSegmentFinder.py : ROBUST: (mean/median/noise) 2.57473923999e-06 / -2.73736075964e-05 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DIFF: (mean/stdev) -1.97058643667e-06 / 0.00128745881435 DEBUG : ADMITSegmentFinder.py : RDIFF: (mean/median/stdev) 3.45510281157e-06 / -4.86739683044e-05 / 0.0011875677355 DEBUG : ADMITSegmentFinder.py : CLASSIC MEAN/SIGMA: 2.57473923999e-06 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DMIN/DMAX: -0.00298768744071 / 0.00121099725445 DEBUG : ADMITSegmentFinder.py : BETTER MEAN/SIGMA: 0.0 / 0.00091138287912 DEBUG : ADMITSegmentFinder.py : SEGMENTS: f=1.5 pmin=5 maxgap=3 minchan=4 DEBUG : ADMITSegmentFinder.py : Found 0 segments above cutoff 0.004557 DEBUG : ADMITSegmentFinder.py : MIN/MAX -0.00372604159761 / 0.0102678004086 DEBUG : ADMITSegmentFinder.py : ROBUST: (mean/median/noise) 2.57473923999e-06 / -2.73736075964e-05 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DIFF: (mean/stdev) -1.97058643667e-06 / 0.00128745881435 DEBUG : ADMITSegmentFinder.py : RDIFF: (mean/median/stdev) 3.45510281157e-06 / -4.86739683044e-05 / 0.0011875677355 DEBUG : ADMITSegmentFinder.py : CLASSIC MEAN/SIGMA: 2.57473923999e-06 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DMIN/DMAX: -0.00298768744071 / 0.00121099725445 DEBUG : ADMITSegmentFinder.py : BETTER MEAN/SIGMA: 0.0 / 0.00091138287912 DEBUG : ADMITSegmentFinder.py : SEGMENTS: f=1.5 pmin=6.66667 maxgap=3 minchan=3 DEBUG : ADMITSegmentFinder.py : Found 0 segments above cutoff 0.006076 DEBUG : ADMITSegmentFinder.py : MIN/MAX -0.00372604159761 / 0.0102678004086 DEBUG : ADMITSegmentFinder.py : ROBUST: (mean/median/noise) 2.57473923999e-06 / -2.73736075964e-05 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DIFF: (mean/stdev) -1.97058643667e-06 / 0.00128745881435 DEBUG : ADMITSegmentFinder.py : RDIFF: (mean/median/stdev) 3.45510281157e-06 / -4.86739683044e-05 / 0.0011875677355 DEBUG : ADMITSegmentFinder.py : CLASSIC MEAN/SIGMA: 2.57473923999e-06 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DMIN/DMAX: -0.00298768744071 / 0.00121099725445 DEBUG : ADMITSegmentFinder.py : BETTER MEAN/SIGMA: 0.0 / 0.00091138287912 DEBUG : ADMITSegmentFinder.py : SEGMENTS: f=1.5 pmin=10 maxgap=3 minchan=2 DEBUG : ADMITSegmentFinder.py : Found 1 segments above cutoff 0.009114 DEBUG : ADMITSegmentFinder.py : Line in 2 channels 1241 - 1242 @ 110.5162 GHz +/- 0.0156 GHz log(S/N) = 0.01 FWHM 99.8 km/s 0.01 TIMING : LineSegment getspectrum [ 6.94563000e-01 6.96255922e-01 1.42861328e+03 2.27843750e+02] INFO : LineSegment_AT.py : Detecting segments in CubeSpectrum based data DEBUG : ADMITSegmentFinder.py : MIN/MAX -0.00372604159761 / 0.0102678004086 DEBUG : ADMITSegmentFinder.py : ROBUST: (mean/median/noise) 2.57473923999e-06 / -2.73736075964e-05 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DIFF: (mean/stdev) -1.97058643667e-06 / 0.00128745881435 DEBUG : ADMITSegmentFinder.py : RDIFF: (mean/median/stdev) 3.45510281157e-06 / -4.86739683044e-05 / 0.0011875677355 DEBUG : ADMITSegmentFinder.py : CLASSIC MEAN/SIGMA: 2.57473923999e-06 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DMIN/DMAX: -0.00298768744071 / 0.00121099725445 DEBUG : ADMITSegmentFinder.py : BETTER MEAN/SIGMA: 0.0 / 0.00091138287912 DEBUG : ADMITSegmentFinder.py : SEGMENTS: f=1.5 pmin=5 maxgap=3 minchan=4 DEBUG : ADMITSegmentFinder.py : Found 0 segments above cutoff 0.004557 DEBUG : ADMITSegmentFinder.py : MIN/MAX -0.00372604159761 / 0.0102678004086 DEBUG : ADMITSegmentFinder.py : ROBUST: (mean/median/noise) 2.57473923999e-06 / -2.73736075964e-05 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DIFF: (mean/stdev) -1.97058643667e-06 / 0.00128745881435 DEBUG : ADMITSegmentFinder.py : RDIFF: (mean/median/stdev) 3.45510281157e-06 / -4.86739683044e-05 / 0.0011875677355 DEBUG : ADMITSegmentFinder.py : CLASSIC MEAN/SIGMA: 2.57473923999e-06 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DMIN/DMAX: -0.00298768744071 / 0.00121099725445 DEBUG : ADMITSegmentFinder.py : BETTER MEAN/SIGMA: 0.0 / 0.00091138287912 DEBUG : ADMITSegmentFinder.py : SEGMENTS: f=1.5 pmin=6.66667 maxgap=3 minchan=3 DEBUG : ADMITSegmentFinder.py : Found 0 segments above cutoff 0.006076 DEBUG : ADMITSegmentFinder.py : MIN/MAX -0.00372604159761 / 0.0102678004086 DEBUG : ADMITSegmentFinder.py : ROBUST: (mean/median/noise) 2.57473923999e-06 / -2.73736075964e-05 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DIFF: (mean/stdev) -1.97058643667e-06 / 0.00128745881435 DEBUG : ADMITSegmentFinder.py : RDIFF: (mean/median/stdev) 3.45510281157e-06 / -4.86739683044e-05 / 0.0011875677355 DEBUG : ADMITSegmentFinder.py : CLASSIC MEAN/SIGMA: 2.57473923999e-06 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DMIN/DMAX: -0.00298768744071 / 0.00121099725445 DEBUG : ADMITSegmentFinder.py : BETTER MEAN/SIGMA: 0.0 / 0.00091138287912 DEBUG : ADMITSegmentFinder.py : SEGMENTS: f=1.5 pmin=10 maxgap=3 minchan=2 DEBUG : ADMITSegmentFinder.py : Found 1 segments above cutoff 0.009114 DEBUG : ADMITSegmentFinder.py : Line in 2 channels 1241 - 1242 @ 110.5162 GHz +/- 0.0156 GHz log(S/N) = 0.01 FWHM 99.8 km/s 0.01 WARNING : specutil.py : 0 [1241, 1242] TIMING : LineSegment segment finder [ 7.42004000e-01 7.43801117e-01 1.42861328e+03 2.27843750e+02] INFO : LineSegment_AT.py : Segment Coverage 2 / 1297 = 0.00154202 REGRESSION : LINESEG: [[110.50078125, 110.53203125]] TIMING : LineSegment done [ 7.72769000e-01 8.15245867e-01 1.47862500e+03 2.77683594e+02] TIMING : LineSegment END [ 2.245532 2.2916069] INFO : AT.py : BDP_OUT[0] = LineSegment_BDP Genspec.lseg INFO : INFO : INFO : Executing LineID_AT - '' (V1.2.7) INFO : INFO : INFO : Run using the following settings: INFO : numsigma : 5.0 INFO : force : [] INFO : tier1width : 0.0 INFO : online : False INFO : recomblevel : shallow INFO : references : etc/co_lines.list INFO : csub : [0, None] INFO : identifylines : True INFO : iterate : True INFO : segment : ADMIT INFO : allowexotics : False INFO : minchan : 4 INFO : pattern : AUTO INFO : edgechannels : 0 INFO : smooth : [] INFO : recalcnoise : False INFO : vlsr : 12387.0 INFO : maxgap : 3 INFO : reject : [] INFO : method : {'PeakFinder': {'thresh': 0.0}} INFO : mode : ONE INFO : TIMING : LineID ADMIT [ 4.65027100e+00 1.64394019e+09] TIMING : LineID BEGIN [ 0. 0.] INFO : LineID_AT.py : Identifylines = True INFO : LineID_AT.py : Using vlsr = 12387 DEBUG : ADMITSegmentFinder.py : MIN/MAX -0.00372604159761 / 0.0102678004086 DEBUG : ADMITSegmentFinder.py : ROBUST: (mean/median/noise) 2.57473923999e-06 / -2.73736075964e-05 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DIFF: (mean/stdev) -1.97058643667e-06 / 0.00128745881435 DEBUG : ADMITSegmentFinder.py : RDIFF: (mean/median/stdev) 3.45510281157e-06 / -4.86739683044e-05 / 0.0011875677355 DEBUG : ADMITSegmentFinder.py : CLASSIC MEAN/SIGMA: 2.57473923999e-06 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DMIN/DMAX: -0.00298768744071 / 0.00121099725445 DEBUG : ADMITSegmentFinder.py : BETTER MEAN/SIGMA: 0.0 / 0.00091138287912 DEBUG : ADMITSegmentFinder.py : SEGMENTS: f=1.5 pmin=5 maxgap=3 minchan=4 DEBUG : ADMITSegmentFinder.py : Found 0 segments above cutoff 0.004557 DEBUG : ADMITSegmentFinder.py : MIN/MAX -0.00372604159761 / 0.0102678004086 DEBUG : ADMITSegmentFinder.py : ROBUST: (mean/median/noise) 2.57473923999e-06 / -2.73736075964e-05 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DIFF: (mean/stdev) -1.97058643667e-06 / 0.00128745881435 DEBUG : ADMITSegmentFinder.py : RDIFF: (mean/median/stdev) 3.45510281157e-06 / -4.86739683044e-05 / 0.0011875677355 DEBUG : ADMITSegmentFinder.py : CLASSIC MEAN/SIGMA: 2.57473923999e-06 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DMIN/DMAX: -0.00298768744071 / 0.00121099725445 DEBUG : ADMITSegmentFinder.py : BETTER MEAN/SIGMA: 0.0 / 0.00091138287912 DEBUG : ADMITSegmentFinder.py : SEGMENTS: f=1.5 pmin=6.66667 maxgap=3 minchan=3 DEBUG : ADMITSegmentFinder.py : Found 0 segments above cutoff 0.006076 DEBUG : ADMITSegmentFinder.py : MIN/MAX -0.00372604159761 / 0.0102678004086 DEBUG : ADMITSegmentFinder.py : ROBUST: (mean/median/noise) 2.57473923999e-06 / -2.73736075964e-05 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DIFF: (mean/stdev) -1.97058643667e-06 / 0.00128745881435 DEBUG : ADMITSegmentFinder.py : RDIFF: (mean/median/stdev) 3.45510281157e-06 / -4.86739683044e-05 / 0.0011875677355 DEBUG : ADMITSegmentFinder.py : CLASSIC MEAN/SIGMA: 2.57473923999e-06 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DMIN/DMAX: -0.00298768744071 / 0.00121099725445 DEBUG : ADMITSegmentFinder.py : BETTER MEAN/SIGMA: 0.0 / 0.00091138287912 DEBUG : ADMITSegmentFinder.py : SEGMENTS: f=1.5 pmin=10 maxgap=3 minchan=2 DEBUG : ADMITSegmentFinder.py : Found 1 segments above cutoff 0.009114 DEBUG : ADMITSegmentFinder.py : Line in 2 channels 1241 - 1242 @ 115.2793 GHz +/- 0.0163 GHz log(S/N) = 0.01 FWHM 99.8 km/s 0.01 TIMING : LineID getspectrum-cubespecs [ 7.66171000e-01 7.68054962e-01 1.47912500e+03 2.78230469e+02] TIMING : LineID segment finder [ 1.25980000e-02 1.26321316e-02 1.47912500e+03 2.78234375e+02] INFO : LineID_AT.py : Detecting segments in CubeSpectrum based data DEBUG : ADMITSegmentFinder.py : MIN/MAX -0.00372604159761 / 0.0102678004086 DEBUG : ADMITSegmentFinder.py : ROBUST: (mean/median/noise) 2.57473923999e-06 / -2.73736075964e-05 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DIFF: (mean/stdev) -1.97058643667e-06 / 0.00128745881435 DEBUG : ADMITSegmentFinder.py : RDIFF: (mean/median/stdev) 3.45510281157e-06 / -4.86739683044e-05 / 0.0011875677355 DEBUG : ADMITSegmentFinder.py : CLASSIC MEAN/SIGMA: 2.57473923999e-06 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DMIN/DMAX: -0.00298768744071 / 0.00121099725445 DEBUG : ADMITSegmentFinder.py : BETTER MEAN/SIGMA: 0.0 / 0.00091138287912 DEBUG : ADMITSegmentFinder.py : SEGMENTS: f=1.5 pmin=5 maxgap=3 minchan=4 DEBUG : ADMITSegmentFinder.py : Found 0 segments above cutoff 0.004557 DEBUG : ADMITSegmentFinder.py : MIN/MAX -0.00372604159761 / 0.0102678004086 DEBUG : ADMITSegmentFinder.py : ROBUST: (mean/median/noise) 2.57473923999e-06 / -2.73736075964e-05 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DIFF: (mean/stdev) -1.97058643667e-06 / 0.00128745881435 DEBUG : ADMITSegmentFinder.py : RDIFF: (mean/median/stdev) 3.45510281157e-06 / -4.86739683044e-05 / 0.0011875677355 DEBUG : ADMITSegmentFinder.py : CLASSIC MEAN/SIGMA: 2.57473923999e-06 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DMIN/DMAX: -0.00298768744071 / 0.00121099725445 DEBUG : ADMITSegmentFinder.py : BETTER MEAN/SIGMA: 0.0 / 0.00091138287912 DEBUG : ADMITSegmentFinder.py : SEGMENTS: f=1.5 pmin=6.66667 maxgap=3 minchan=3 DEBUG : ADMITSegmentFinder.py : Found 0 segments above cutoff 0.006076 DEBUG : ADMITSegmentFinder.py : MIN/MAX -0.00372604159761 / 0.0102678004086 DEBUG : ADMITSegmentFinder.py : ROBUST: (mean/median/noise) 2.57473923999e-06 / -2.73736075964e-05 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DIFF: (mean/stdev) -1.97058643667e-06 / 0.00128745881435 DEBUG : ADMITSegmentFinder.py : RDIFF: (mean/median/stdev) 3.45510281157e-06 / -4.86739683044e-05 / 0.0011875677355 DEBUG : ADMITSegmentFinder.py : CLASSIC MEAN/SIGMA: 2.57473923999e-06 / 0.00112907218602 DEBUG : ADMITSegmentFinder.py : DMIN/DMAX: -0.00298768744071 / 0.00121099725445 DEBUG : ADMITSegmentFinder.py : BETTER MEAN/SIGMA: 0.0 / 0.00091138287912 DEBUG : ADMITSegmentFinder.py : SEGMENTS: f=1.5 pmin=10 maxgap=3 minchan=2 DEBUG : ADMITSegmentFinder.py : Found 1 segments above cutoff 0.009114 DEBUG : ADMITSegmentFinder.py : Line in 2 channels 1241 - 1242 @ 115.2793 GHz +/- 0.0163 GHz log(S/N) = 0.01 FWHM 99.8 km/s 0.01 WARNING : specutil.py : 0 [1241, 1242] INFO : LineID_AT.py : Searching for spectral peaks with method: PeakFinder DEBUG : LineID_AT.py : Searching for spectral peaks specs 0 DEBUG : LineID_AT.py : merging all peaks for mode=ONE INFO : utils.py : Gaussian fit attempted with fewer than three points (2). Using conservation of area method to determine parameters. /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7/lib/python2.7/site-packages/numpy/ma/core.py:4144: UserWarning: Warning: converting a masked element to nan. warnings.warn("Warning: converting a masked element to nan.") INFO : LineID_AT.py : Found line: CO 1-0 @ 115.2712GHz, channels 1241 - 1242 REGRESSION : LINEID: CO 115.27120 1241 1242 INFO : LineID_AT.py : Line Coverage 2 / 1297 = 0.00154202 TIMING : LineID done [ 3.658886 3.70334101 1566.13671875 365.8828125 ] TIMING : LineID END [ 4.451757 4.49816608] INFO : AT.py : BDP_OUT[0] = LineList_BDP Genspec.ll TIMING : ADMITrun END [ 7.57337 7.7530849] INFO : Admit.py : ADMIT run() finished [flowcount 1] [cpu 7.57337 7.75308 ]