LMTOY>> seq_pipeline: 2-feb-2022 LMTOY>> READING lmtoy_functions 11-mar-2022 via /lma1/teuben/lmtoy/examples/seq_pipeline.sh Working directory ./2022S1SEQUOIACommissioning/94048 LMTOY>> reading lmtoy_94048.rc LMTOY>> updating /lma1/teuben/lmtoy/examples/lmtoy_functions.sh: line 175: ifproc.sh: command not found LMTOY>> process_otf_map2 in 2 seconds Traceback (most recent call last): File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/ifproc/ifproc.py", line 538, in __init__ self.chop = self.nc.variables['Data.Msip1mm.BeamChopperActPos'][:] KeyError: 'Data.Msip1mm.BeamChopperActPos' Traceback (most recent call last): File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/ifproc/ifproc.py", line 668, in __init__ self.chop = self.nc.variables['Data.Msip1mm.BeamChopperActPos'][:] KeyError: 'Data.Msip1mm.BeamChopperActPos' /lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray. a.partition(kth, axis=axis, kind=kind, order=order) /lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:549: RuntimeWarning: divide by zero encountered in true_divide self.tsys_spectrum = 280 * sky_spectrum / (hot_spectrum - /lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:549: RuntimeWarning: invalid value encountered in true_divide self.tsys_spectrum = 280 * sky_spectrum / (hot_spectrum - /lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:394: RuntimeWarning: invalid value encountered in true_divide spectra.append((self.raw_spec[i,:] - ref) / ref) {'--b_order': '0', '--b_regions': '[[-326,-76],[124,374]]', '--bank': '0', '--eliminate_list': '0', '--help': False, '--l_regions': '[[-76,124]]', '--obsnum': '94048', '--output': 'R-Cas_94048.nc', '--path': '/n/lma1/lmt/data_lmt/', '--pix_list': '0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15', '--restfreq': None, '--sample': None, '--save_tsys': False, '--slice': '[-326,374]', '--stype': '2', '--tsys': '250.0', '--use_cal': True, '--use_otf_cal': False, '--x_axis': 'VLSR'} program process_otf_map options slice = [-326, 374] use_cal = True output = R-Cas_94048.nc pix_list = [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15] data_path = /n/lma1/lmt/data_lmt/ use_otf_cal = False stype = 2 b_regions = [[-326, -76], [124, 374]] l_regions = [[-76, 124]] tsys = 250.0 eliminate_list = [0] output_file_name = R-Cas_94048.nc obsnum = 94048 b_order = 0 path = /n/lma1/lmt/data_lmt/ bank = 0 x_axis = VLSR 2022-02-22T15:20:39 begin /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094048_00_0001.nc 2022-02-22T15:24:05 end /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094048_00_0001.nc BufPos 1 11.1 sec 94048 BufPos 0 188.9 sec 94048 BufPos 1 6.2 sec 94048 before read npix from pixels npix = 16 from xlen npix = 16 TRACKING Sequoia PIXEL 10 Map Parameters: Az Continuous HPBW= 14.0 XLength= 240.0 YLength= 240.0 XStep= 2.00 YStep= 0.90 /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094048_00_0001.nc does not have bs parameters 94048 is a Map observation PJT map_coord 0 get chop 'Data.Msip1mm.BeamChopperActPos' no chop 2022-02-22T15:20:11 begin /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094047_00_0001.nc 2022-02-22T15:20:18 end /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094047_00_0001.nc BufPos 3 4.8 sec 94047 BufPos 2 2.6 sec 94047 before read npix from pixels npix = 16 from xlen npix = 16 TRACKING Sequoia PIXEL 10 /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094047_00_0001.nc does not have map parameters /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094047_00_0001.nc does not have bs parameters 94047 is a Cal observation get chop cal 'Data.Msip1mm.BeamChopperActPos' no chop cal read_roach /n/lma1/lmt/data_lmt/spectrometer/roach0/roach0_94048_0_1_R-Cas_2022-02-22_202031.nc nspec,nchan=7840,2048 r:0 inp:0 pix:0 time_offset:-0.030000 r:0 inp:1 pix:1 time_offset:-0.030000 r:0 inp:2 pix:2 time_offset:-0.030000 r:0 inp:3 pix:3 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach1/roach1_94048_0_1_R-Cas_2022-02-22_202032.nc nspec,nchan=7844,2048 r:1 inp:0 pix:4 time_offset:-0.030000 r:1 inp:1 pix:5 time_offset:-0.030000 r:1 inp:2 pix:6 time_offset:-0.030000 r:1 inp:3 pix:7 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach2/roach2_94048_0_1_R-Cas_2022-02-22_202032.nc nspec,nchan=7852,2048 r:2 inp:0 pix:8 time_offset:-0.030000 r:2 inp:1 pix:9 time_offset:-0.030000 r:2 inp:2 pix:10 time_offset:-0.030000 r:2 inp:3 pix:11 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach3/roach3_94048_0_1_R-Cas_2022-02-22_202032.nc nspec,nchan=7856,2048 r:3 inp:0 pix:12 time_offset:-0.030000 r:3 inp:1 pix:13 time_offset:-0.030000 r:3 inp:2 pix:14 time_offset:-0.030000 r:3 inp:3 pix:15 time_offset:-0.030000 RESTFREQ 86.2434 GHz read_roach /n/lma1/lmt/data_lmt/spectrometer/roach0/roach0_94047_0_1_R-Cas_2022-02-22_202010.nc nspec,nchan=232,2048 r:0 inp:0 pix:0 time_offset:-0.030000 r:0 inp:1 pix:1 time_offset:-0.030000 r:0 inp:2 pix:2 time_offset:-0.030000 r:0 inp:3 pix:3 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach1/roach1_94047_0_1_R-Cas_2022-02-22_202010.nc nspec,nchan=240,2048 r:1 inp:0 pix:4 time_offset:-0.030000 r:1 inp:1 pix:5 time_offset:-0.030000 r:1 inp:2 pix:6 time_offset:-0.030000 r:1 inp:3 pix:7 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach2/roach2_94047_0_1_R-Cas_2022-02-22_202010.nc nspec,nchan=240,2048 r:2 inp:0 pix:8 time_offset:-0.030000 r:2 inp:1 pix:9 time_offset:-0.030000 r:2 inp:2 pix:10 time_offset:-0.030000 r:2 inp:3 pix:11 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach3/roach3_94047_0_1_R-Cas_2022-02-22_202010.nc nspec,nchan=248,2048 r:3 inp:0 pix:12 time_offset:-0.030000 r:3 inp:1 pix:13 time_offset:-0.030000 r:3 inp:2 pix:14 time_offset:-0.030000 r:3 inp:3 pix:15 time_offset:-0.030000 TSYS[0] = 89.1219 +/- 7.58595 (2048 channels) TSYS[1] = 83.702 +/- 8.91802 (2048 channels) TSYS[2] = 93.0844 +/- 1.66545 (2048 channels) TSYS[3] = 95.7218 +/- 1.75734 (2048 channels) TSYS[4] = 94.2541 +/- 3.14775 (2048 channels) TSYS[5] = 91.2425 +/- 2.1712 (2048 channels) TSYS[6] = 91.4672 +/- 1.18213 (2048 channels) TSYS[7] = 96.7607 +/- 3.54877 (2048 channels) TSYS[8] = 96.5009 +/- 3.29031 (2048 channels) TSYS[9] = 92.3553 +/- 3.02314 (2048 channels) TSYS[10] = 98.353 +/- 1.8817 (2048 channels) TSYS[11] = 94.8596 +/- 3.96519 (2048 channels) TSYS[12] = 99.6066 +/- 1.68985 (2048 channels) TSYS[13] = 97.0686 +/- 1.68103 (2048 channels) TSYS[14] = 95.3988 +/- 1.85901 (2048 channels) TSYS[15] = 98.3704 +/- 3.74805 (2048 channels) Spectral Band velocity range: 1413.77 -1365.77 km/s Total Number of OTF Spectra = 29208 NSPEC: 29208 NCHAN: 515 FAST_NC: True Looping over 16 pixel list [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]: Processing 1 CAL's for Tsys Pix Nspec Mean Std MAD_std Min Max RMS_max Warnings TSYS[0] slice: 90.9643 (0.522705) minmax: 89.3929 93.7069 0 1825 -0.004 0.566 0.501 -3.364 71.229 0.482 0.551 TSYS[1] slice: 90.1864 (2.02116) minmax: 85.9192 93.4189 1 1825 0.002 0.519 0.473 -2.498 60.581 0.469 0.525 TSYS[2] slice: 94.4089 (0.720097) minmax: 93.0852 96.3254 2 1825 0.002 0.523 0.492 -2.254 46.860 0.491 0.554 TSYS[3] slice: 96.934 (0.527423) minmax: 95.5815 98.2664 3 1825 0.004 0.567 0.506 -2.482 74.732 0.504 0.566 TSYS[4] slice: 94.0894 (0.819757) minmax: 92.1176 96.1244 4 1826 0.004 0.560 0.491 -2.599 84.139 0.491 0.549 TSYS[5] slice: 91.0781 (1.09113) minmax: 89.1514 93.5528 5 1826 0.001 0.552 0.479 -2.347 88.476 0.478 0.534 TSYS[6] slice: 92.4557 (0.717532) minmax: 91.1436 94.3447 6 1826 0.002 0.545 0.481 -2.313 82.726 0.480 0.546 TSYS[7] slice: 96.516 (0.967478) minmax: 94.2266 98.9928 7 1826 0.003 0.544 0.504 -2.406 52.030 0.502 0.566 TSYS[8] slice: 96.2439 (0.81341) minmax: 93.8749 98.3851 8 1825 0.003 0.595 0.504 -2.341 88.205 0.504 0.566 TSYS[9] slice: 93.1581 (0.465774) minmax: 92.1409 94.2925 9 1825 0.004 0.546 0.488 -2.366 69.832 0.488 0.566 TSYS[10] slice: 99.171 (0.751715) minmax: 97.6404 101.152 10 1825 0.004 0.605 0.516 -2.587 86.841 0.516 0.589 TSYS[11] slice: 97.2891 (2.85692) minmax: 92.6789 103.809 11 1825 0.005 0.575 0.509 -2.673 77.386 0.510 0.574 TSYS[12] slice: 100.9 (0.529216) minmax: 99.5254 102.293 12 1826 0.004 0.596 0.528 -2.665 94.380 0.528 0.599 TSYS[13] slice: 98.3204 (0.642617) minmax: 96.9245 100.051 13 1826 0.000 0.574 0.516 -2.459 87.438 0.514 0.579 TSYS[14] slice: 96.5539 (0.426204) minmax: 95.4768 97.8795 14 1826 0.005 0.595 0.506 -2.449 94.926 0.505 0.570 TSYS[15] slice: 100.252 (0.415313) minmax: 98.7733 102.633 15 1826 0.002 0.593 0.527 -2.580 86.828 0.525 0.583 CPU TIME: 14.3487 sec CPU TIME: 14.3843 sec Warnings: *P ratio: ratio of std/mad too high for data *M ratio: ratio of std/mad too high for RMS X-range: -166.969 188.769 Y-range: -186.156 153.674 arcsec Written R-Cas_94048.nc LMTOY>> view_spec_file {'--help': False, '--input': 'R-Cas_94048.nc', '--pix_list': '0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15', '--plot_range': '-1,3', '--plots': 'R-Cas_94048_specviews', '--rms_cut': '-4', '--show_pixel': None, '--skip_tsys': False} SLR Plots initialized with 1 method=R-Cas_94048_specviews Max sequence=1826 Plots saving in R-Cas_94048_specviews.1.png (overwriting the old one) Plots saving in R-Cas_94048_specviews.2.png (overwriting the old one) Plots saving in R-Cas_94048_specviews.3.png (overwriting the old one) Plots saving in R-Cas_94048_specviews.4.png (overwriting the old one) Plots saving in R-Cas_94048_specviews.5.png (overwriting the old one) NEW TSYS PIC SHAPE (1, 16, 515) PIXEL: 0 [ 0 1 2 ... 1822 1823 1824] PIXEL: 1 [1825 1826 1827 ... 3647 3648 3649] PIXEL: 2 [3650 3651 3652 ... 5472 5473 5474] PIXEL: 3 [5475 5476 5477 ... 7297 7298 7299] PIXEL: 4 [7300 7301 7302 ... 9123 9124 9125] PIXEL: 5 [ 9126 9127 9128 ... 10949 10950 10951] PIXEL: 6 [10952 10953 10954 ... 12775 12776 12777] PIXEL: 7 [12778 12779 12780 ... 14601 14602 14603] PIXEL: 8 [14604 14605 14606 ... 16426 16427 16428] PIXEL: 9 [16429 16430 16431 ... 18251 18252 18253] PIXEL: 10 [18254 18255 18256 ... 20076 20077 20078] PIXEL: 11 [20079 20080 20081 ... 21901 21902 21903] PIXEL: 12 [21904 21905 21906 ... 23727 23728 23729] PIXEL: 13 [23730 23731 23732 ... 25553 25554 25555] PIXEL: 14 [25556 25557 25558 ... 27379 27380 27381] PIXEL: 15 [27382 27383 27384 ... 29205 29206 29207] Plots saving in R-Cas_94048_specviews.6.png (overwriting the old one) /lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray. a.partition(kth, axis=axis, kind=kind, order=order) SLR Plots initialized with 3 method=R-Cas_94048_specpoint,png,1 MAD: 0 0.4812448 0.01747852132283366 0.5511588877663103 MAD: 1 0.46785867 0.0178063297583659 0.5390839911754924 MAD: 2 0.49078777 0.017818966665302447 0.5620636409856269 MAD: 3 0.503943 0.01858173213539183 0.5782699546073937 MAD: 4 0.4906137 0.01829170186570135 0.5637805064221559 MAD: 5 0.4775384 0.018529505478052682 0.5516564287611182 MAD: 6 0.47991443 0.016797188788003195 0.5471031819556016 MAD: 7 0.50193477 0.01872471476072979 0.5768336258123283 MAD: 8 0.5032249 0.017995220587574738 0.5752057916558715 MAD: 9 0.48798743 0.018437821625278804 0.5617387154046949 MAD: 10 0.5153747 0.019664352742941503 0.5940321310683542 MAD: 11 0.50970227 0.01836195599867025 0.5831500892572847 MAD: 12 0.52783257 0.019850990137696617 0.6072365282425894 MAD: 13 0.51514673 0.01876373010627164 0.5902016527554088 MAD: 14 0.5044556 0.018143880984036284 0.57703114994704 MAD: 15 0.525404 0.019055351035576505 0.6016253805827357 Plots saving in R-Cas_94048_specpoint.1.png (overwriting the old one) /lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray. a.partition(kth, axis=axis, kind=kind, order=order) SLR Plots initialized with 3 method=R-Cas_94048_specpoint,png,2 MAD: 0 0.4812448 0.01747852132283366 0.5511588877663103 MAD: 1 0.46785867 0.0178063297583659 0.5390839911754924 MAD: 2 0.49078777 0.017818966665302447 0.5620636409856269 MAD: 3 0.503943 0.01858173213539183 0.5782699546073937 MAD: 4 0.4906137 0.01829170186570135 0.5637805064221559 MAD: 5 0.4775384 0.018529505478052682 0.5516564287611182 MAD: 6 0.47991443 0.016797188788003195 0.5471031819556016 MAD: 7 0.50193477 0.01872471476072979 0.5768336258123283 MAD: 8 0.5032249 0.017995220587574738 0.5752057916558715 MAD: 9 0.48798743 0.018437821625278804 0.5617387154046949 MAD: 10 0.5153747 0.019664352742941503 0.5940321310683542 MAD: 11 0.50970227 0.01836195599867025 0.5831500892572847 MAD: 12 0.52783257 0.019850990137696617 0.6072365282425894 MAD: 13 0.51514673 0.01876373010627164 0.5902016527554088 MAD: 14 0.5044556 0.018143880984036284 0.57703114994704 MAD: 15 0.525404 0.019055351035576505 0.6016253805827357 Plots saving in R-Cas_94048_specpoint.2.png (overwriting the old one) LMTOY>> make_spec_fits (waterfall) pix [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15] Min nsamp 1825 Binning [1, 1] FITS file will be 1825 x 515 x 16 Written waterfall cube to R-Cas_94048.wf.fits pix [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15] Min nsamp 1825 Binning [10, 1] FITS file will be 182 x 515 x 16 New shape: (16, 515, 182) Written waterfall cube to R-Cas_94048.wf10.fits LMTOY>> grid_data {'--cell': '7.5', '--edge': '0', '--help': False, '--input': 'R-Cas_94048.nc', '--n_samples': '256', '--noise_sigma': '1', '--otf_a': '1.1', '--otf_b': '4.75', '--otf_c': '2', '--otf_select': '1', '--output': 'R-Cas_94048.fits', '--pix_list': '0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15', '--program_path': 'spec_driver_fits', '--resolution': '15', '--rmax': '3', '--rms_cut': '-4', '--sample': '-1', '--weight': 'R-Cas_94048.wt.fits', '--x_extent': '240', '--y_extent': '240'} Removing R-Cas_94048.fits Removing R-Cas_94048.wt.fits STDOUT **************************** spec_driver_fits LMTSLR 15-mar-2022 CMD: spec_driver_fits -i R-Cas_94048.nc -o R-Cas_94048.fits -w R-Cas_94048.wt.fits -l 15 -c 7.5 -u [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15] -z -4 -s 1 -x 240 -y 240 -f 1 -r 3 -n 256 -0 1.1 -1 4.75 -2 2 -b -1 -e 0 file list=R-Cas_94048.nc DEBUG:7.5 sample_list=-1 Warning: sample list is not a multiple of 3 nsamples=2 Processing 1 SpecFiles: Opening SpecFile file R-Cas_94048.nc file: R-Cas_94048.nc nspec= 29208 nchan= 515 SpecFile version 4-mar-2022 dev X-range: -166.969 188.769 Y-range: -186.156 153.674 arcsec X-ramp: -83.5686 105.369 Y-ramp: -102.756 70.2744 arcsec MapSize: 355.737 x 339.83 arcsec 94048 R-Cas DATE-OBS 2022-02-22T15:20:39 CF.n_cells= 7 delta=0.176471 cell=7.5 resol=15 oft_select=1 C-AXIS 2 starts at -325.649 C-AXIS 1 starts at -240 C-AXIS 0 starts at -240 P-AXIS 1 starts at -240 P-AXIS 0 starts at -240 P-AXIS 1 starts at -240 P-AXIS 0 starts at -240 WARNING fuzzy_edge=0 pixel: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 used?: 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 rms_stats: n=29208 rms_cutoff=-4 Cube Completed, 29207/29208 Spectra accepted = 1.000 Weighting Completed, fuzzy_edge=0 Weight at 0.000000 0.000000 is 129.216034 write to R-Cas_94048.fits write weights to R-Cas_94048.wt.fits STDERR **************************** Exit Code: 0 LMTOY>> Some NEMO post-processing ### nemo Debug Info: FITS file: Image size 65 65 515 ### Warning [fitsccd]: Setting map minimum from 0 to -1147.68 ### Warning [fitsccd]: Setting map maximum from 0 to 1172.58 ### nemo Debug Info: There were 1124245 blank values in the image (51.668639 %) ### nemo Debug Info: FITS file: Image size 65 65 ### Warning [fitsccd]: Setting map minimum from 0 to -13.0907 ### Warning [fitsccd]: Setting map maximum from 0 to 271.89 ### nemo Debug Info: There were no blank values set in the image LMTOY>> STATS R-Cas_94048.ccd centerbox robust ### Warning [ccdsub]: Sampling will be done ### Warning [ccdsub]: Attempting to fix the WCS ### nemo Debug Info: WCS Corner: -0.03125 0.03125 -325649 Number of points : 595340 Min and Max : -1.904100 77.727585 Mean and dispersion : 0.003534 0.291868 Skewness and kurtosis : 131.904181 24395.519951 Sum and Sum*Dx*Dy*Dz* : 2103.749857 -12.398415 Points per beam (map) : 1 N Robust : 583955 Mean Robust : -0.000202 Sigma Robust : 0.085435 Median Robust : -0.000079 0/595340 out-of-range points discarded LMTOY>> STATS R-Cas_94048.wt.ccd centerbox robust ### Warning [ccdsub]: Sampling will be done ### Warning [ccdsub]: Attempting to fix the WCS ### nemo Debug Info: WCS Corner: -0.03125 0.03125 0 Number of points : 1156 Min and Max : 7.421077 271.890015 Mean and dispersion : 119.417422 38.223495 Skewness and kurtosis : 0.229892 0.753559 Sum and Sum*Dx*Dy* : 138046.539321 -0.599160 Points per beam (map) : 1 N Robust : 1105 Mean Robust : 117.247712 Sigma Robust : 32.696910 Median Robust : 122.818031 0/1156 out-of-range points discarded ### nemo Debug Info: Keeping 65*65*515 cube ### Warning [ccdfits]: Replacing header from R-Cas_94048.wt.fits SLABS: [[-326,-76],[124,374]] == -326,-76,124,374 ### Warning [ccdslice]: axis=1 not fully supported yet ### nemo Debug Info: Axis: 515 0 -325649 1357.86 ### nemo Debug Info: Axis min/max: -325649 372291 ### nemo Debug Info: slab -326 -76 -> 0 183 ### Warning [ccdslice]: 515 >= 515: ### nemo Debug Info: slab 124 374 -> 331 514 ### nemo Debug Info: Total planes: 368 ### Warning [ccdslice]: Code not converted to fix reference pixel value ### Warning [ccdfits]: Replacing header from R-Cas_94048.wt.fits ### Warning [ccdfits]: Replacing header from R-Cas_94048.wt.fits ### Warning [ccdfits]: Replacing header from R-Cas_94048.fits QAC_STATS: R-Cas_94048-full 0.000674365 7.97721 -1147.68 1172.58 709.182 0.002796 ### Warning [ccdsub]: Sampling will be done ### Warning [ccdsub]: Attempting to fix the WCS ### nemo Debug Info: WCS Corner: -0.03125 0.03125 -325649 QAC_STATS: R-Cas_94048-cent 0.00353369 0.291868 -1.9041 77.7276 2103.75 0.0462847 ### nemo Debug Info: FITS file: Image size 65 65 515 ### Warning [fitsccd]: Setting map minimum from 0 to -0.143606 ### Warning [fitsccd]: Setting map maximum from 0 to 8.90036 ### nemo Debug Info: There were no blank values set in the image spectab : # 32 32 515 min/mean/sig/max -0.272656 0.293467 3.47441 59.9055 -0.000304138 2.76777 0.563292 specstab: # 32 32 515 min/mean/sig/max -0.0436759 0.0813761 0.689754 8.31789 1.2288e-05 0.242009 0.248098 Traceback (most recent call last): File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in f = aplpy.FITSFigure(fitsfile) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper return f(*args, **kwargs) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__ self._get_hdu(data, hdu, north, convention=convention, File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu raise IOError("File not found: " + filename) OSError: File not found: R-Cas_94048.mom0.fits Traceback (most recent call last): File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in f = aplpy.FITSFigure(fitsfile) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper return f(*args, **kwargs) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__ self._get_hdu(data, hdu, north, convention=convention, File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu raise IOError("File not found: " + filename) OSError: File not found: R-Cas_94048.mom1.fits Traceback (most recent call last): File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in f = aplpy.FITSFigure(fitsfile) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper return f(*args, **kwargs) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__ self._get_hdu(data, hdu, north, convention=convention, File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu raise IOError("File not found: " + filename) OSError: File not found: R-Cas_94048.mom2.fits INFO: Auto-setting vmin to -3.141e+01 [aplpy.core] INFO: Auto-setting vmax to 2.507e+02 [aplpy.core] INFO: Auto-setting vmin to -3.141e+01 [aplpy.core] INFO: Auto-setting vmax to 2.507e+02 [aplpy.core] Writing R-Cas_94048.wt.png INFO: Auto-setting vmin to -2.936e+01 [aplpy.core] INFO: Auto-setting vmax to 3.259e+02 [aplpy.core] INFO: Auto-setting vmin to -2.936e+01 [aplpy.core] INFO: Auto-setting vmax to 3.259e+02 [aplpy.core] Writing R-Cas_94048.wt2.png INFO: Auto-setting vmin to -2.857e+01 [aplpy.core] INFO: Auto-setting vmax to 3.172e+02 [aplpy.core] INFO: Auto-setting vmin to -2.857e+01 [aplpy.core] INFO: Auto-setting vmax to 3.172e+02 [aplpy.core] Writing R-Cas_94048.wt3.png Traceback (most recent call last): File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in f = aplpy.FITSFigure(fitsfile) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper return f(*args, **kwargs) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__ self._get_hdu(data, hdu, north, convention=convention, File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu raise IOError("File not found: " + filename) OSError: File not found: R-Cas_94048.wtn.fits INFO: Auto-setting vmin to -6.301e+00 [aplpy.core] INFO: Auto-setting vmax to 6.995e+01 [aplpy.core] INFO: Auto-setting vmin to -6.301e+00 [aplpy.core] INFO: Auto-setting vmax to 6.995e+01 [aplpy.core] Writing R-Cas_94048.wtr.png WARNING: FITSFixedWarning: RADECSYS= 'FK5 ' / the RADECSYS keyword is deprecated, use RADESYSa. [astropy.wcs.wcs] INFO: Setting slices=[0] [aplpy.core] INFO: Auto-setting vmin to -1.019e+04 [aplpy.core] INFO: Auto-setting vmax to 4.979e+04 [aplpy.core] INFO: Auto-setting vmin to -1.019e+04 [aplpy.core] INFO: Auto-setting vmax to 4.979e+04 [aplpy.core] Writing R-Cas_94048.mom0.png LMTOY>> Created R-Cas_94048.nf.fits and R-Cas_94048.nfs.fits LMTOY>> ADMIT post-processing LMTOY>> lmtoy_admit: 31-oct-2021 /lma1/teuben/lmtoy/examples/lmtoy_admit.sh: line 33: export: `R-Cas_94048.nfs.fits': not a valid identifier No PDIR directory used, all work in the current directory ADMIT = /lma1/teuben/lmtoy/admit version = 1.0.8.5 CASA_PATH = /n/astromake/opt/casa/58 linux admit lma.astro.umd.edu CASA_ROOT = /n/astromake/opt/casa/58 prefix = /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7 version = 5.8.0-rel-109 revision = 1 Trying CASA6, no worries if this fails Traceback (most recent call last): File "", line 1, in ImportError: No module named casatools LMTOY>> ADMIT post-processing Found 33 Xvfb 1584150 Sl Xvfb 1583378 Sl Xvfb 1582274 Sl Xvfb 1581590 Sl Xvfb ### (1/1) : processing R-Cas_94048.nfs.fits R-Cas_94048.nfs.fits [65, 65, 515] R-Cas 0.0 0.0 -0.0003256487 0.008 /lma1/teuben/lmtoy/admit/admit/test/admit1.py --basename x R-Cas_94048.nfs.fits 174.002u 7.657s 4:10.14 72.6% 0+0k 2936+499536io 0pf+0w Logfile: R-Cas_94048.nfs.fits.log LMTOY>> lmtoy_admit: 31-oct-2021 /lma1/teuben/lmtoy/examples/lmtoy_admit.sh: line 33: export: `R-Cas_94048.nf.fits': not a valid identifier No PDIR directory used, all work in the current directory ADMIT = /lma1/teuben/lmtoy/admit version = 1.0.8.5 CASA_PATH = /n/astromake/opt/casa/58 linux admit lma.astro.umd.edu CASA_ROOT = /n/astromake/opt/casa/58 prefix = /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7 version = 5.8.0-rel-109 revision = 1 Trying CASA6, no worries if this fails Traceback (most recent call last): File "", line 1, in ImportError: No module named casatools LMTOY>> ADMIT post-processing ### (1/1) : processing R-Cas_94048.nf.fits R-Cas_94048.nf.fits [65, 65, 515] R-Cas 0.0 0.0 -0.0003256487 0.008 /lma1/teuben/lmtoy/admit/admit/test/admit1.py --basename x R-Cas_94048.nf.fits 51.353u 2.411s 1:05.53 82.0% 0+0k 312+74008io 0pf+0w Logfile: R-Cas_94048.nf.fits.log LMTOY>> Created R-Cas_94048.fits and R-Cas_94048.wt.fits LMTOY>> Parameter file used: lmtoy_94048.rc LMTOY>> Making summary index.html: Making index.html for obsnum=94048 R-Cas_94048 R-Cas_94048_specviews R-Cas_94048_specpoint Writing index.html Writing index_pipeline.html Writing index_admit.html Writing index_pars.html Writing index_log.html