LMTOY>> seq_pipeline: 2-feb-2022 LMTOY>> READING lmtoy_functions 11-mar-2022 via /lma1/teuben/lmtoy/examples/seq_pipeline.sh Working directory ./2022S1SEQUOIACommissioning/94050 LMTOY>> reading lmtoy_94050.rc LMTOY>> updating LMTOY>> process_otf_map2 in 2 seconds Traceback (most recent call last): File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/ifproc/ifproc.py", line 537, in __init__ self.chop = self.nc.variables['Data.Msip1mm.BeamChopperActPos'][:] KeyError: 'Data.Msip1mm.BeamChopperActPos' Traceback (most recent call last): File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/ifproc/ifproc.py", line 668, in __init__ self.chop = self.nc.variables['Data.Msip1mm.BeamChopperActPos'][:] KeyError: 'Data.Msip1mm.BeamChopperActPos' /lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray. a.partition(kth, axis=axis, kind=kind, order=order) /lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:547: RuntimeWarning: invalid value encountered in true_divide self.tsys_spectrum = 280 * sky_spectrum / (hot_spectrum - /lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:547: RuntimeWarning: divide by zero encountered in true_divide self.tsys_spectrum = 280 * sky_spectrum / (hot_spectrum - /lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:392: RuntimeWarning: invalid value encountered in true_divide spectra.append((self.raw_spec[i,:] - ref) / ref) /lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:392: RuntimeWarning: divide by zero encountered in true_divide spectra.append((self.raw_spec[i,:] - ref) / ref) /lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:434: RuntimeWarning: invalid value encountered in multiply self.reduced_spectra = np.array(spectra) * tsys_spectrum {'--b_order': '0', '--b_regions': '[[-326,-76],[124,374]]', '--bank': '0', '--eliminate_list': '0', '--help': False, '--l_regions': '[[-76,124]]', '--obsnum': '94050', '--output': 'R-Cas_94050.nc', '--path': '/n/lma1/lmt/data_lmt/', '--pix_list': '0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15', '--restfreq': None, '--sample': None, '--save_tsys': False, '--slice': '[-326,374]', '--stype': '2', '--tsys': '250.0', '--use_cal': True, '--use_otf_cal': False, '--x_axis': 'VLSR'} program process_otf_map options output_file_name = R-Cas_94050.nc x_axis = VLSR use_cal = True l_regions = [[-76, 124]] output = R-Cas_94050.nc eliminate_list = [0] bank = 0 use_otf_cal = False tsys = 250.0 stype = 2 obsnum = 94050 b_order = 0 b_regions = [[-326, -76], [124, 374]] data_path = /n/lma1/lmt/data_lmt/ slice = [-326, 374] pix_list = [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15] path = /n/lma1/lmt/data_lmt/ 2022-02-22T15:39:00 begin /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094050_00_0001.nc 2022-02-22T15:45:53 end /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094050_00_0001.nc BufPos 3 4.3 sec 94050 BufPos 2 4.6 sec 94050 BufPos 1 16.7 sec 94050 BufPos 0 53.8 sec 94050 BufPos 1 32.0 sec 94050 BufPos 0 55.4 sec 94050 BufPos 1 32.4 sec 94050 BufPos 0 54.7 sec 94050 BufPos 1 31.9 sec 94050 BufPos 0 52.2 sec 94050 BufPos 1 18.4 sec 94050 BufPos 3 4.6 sec 94050 BufPos 2 4.2 sec 94050 BufPos 1 17.0 sec 94050 BufPos 0 21.5 sec 94050 BufPos 1 10.1 sec 94050 before read npix from pixels npix = 16 from xlen npix = 16 Map Parameters: L Continuous HPBW= 16.0 XLength= 96.0 YLength= 96.0 XStep= 1.00 YStep= 0.50 /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094050_00_0001.nc does not have bs parameters 94050 is a Map observation get chop 'Data.Msip1mm.BeamChopperActPos' no chop 2022-02-22T15:38:34 begin /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094049_00_0001.nc 2022-02-22T15:38:41 end /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094049_00_0001.nc BufPos 3 4.4 sec 94049 BufPos 2 2.6 sec 94049 before read npix from pixels npix = 16 from xlen npix = 16 /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094049_00_0001.nc does not have map parameters /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094049_00_0001.nc does not have bs parameters 94049 is a Cal observation get chop cal 'Data.Msip1mm.BeamChopperActPos' no chop cal read_roach /n/lma1/lmt/data_lmt/spectrometer/roach0/roach0_94050_0_1_R-Cas_2022-02-22_203851.nc nspec,nchan=11524,4096 r:0 inp:0 pix:0 time_offset:-0.030000 r:0 inp:1 pix:1 time_offset:-0.030000 r:0 inp:2 pix:2 time_offset:-0.030000 r:0 inp:3 pix:3 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach1/roach1_94050_0_1_R-Cas_2022-02-22_203851.nc nspec,nchan=11612,4096 r:1 inp:0 pix:4 time_offset:-0.030000 r:1 inp:1 pix:5 time_offset:-0.030000 r:1 inp:2 pix:6 time_offset:-0.030000 r:1 inp:3 pix:7 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach2/roach2_94050_0_1_R-Cas_2022-02-22_203851.nc nspec,nchan=11692,4096 r:2 inp:0 pix:8 time_offset:-0.030000 r:2 inp:1 pix:9 time_offset:-0.030000 r:2 inp:2 pix:10 time_offset:-0.030000 r:2 inp:3 pix:11 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach3/roach3_94050_0_1_R-Cas_2022-02-22_203851.nc nspec,nchan=11672,4096 r:3 inp:0 pix:12 time_offset:-0.030000 r:3 inp:1 pix:13 time_offset:-0.030000 r:3 inp:2 pix:14 time_offset:-0.030000 r:3 inp:3 pix:15 time_offset:-0.030000 RESTFREQ 86.2434 GHz read_roach /n/lma1/lmt/data_lmt/spectrometer/roach0/roach0_94049_0_1_R-Cas_2022-02-22_203833.nc nspec,nchan=232,4096 r:0 inp:0 pix:0 time_offset:-0.030000 r:0 inp:1 pix:1 time_offset:-0.030000 r:0 inp:2 pix:2 time_offset:-0.030000 r:0 inp:3 pix:3 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach1/roach1_94049_0_1_R-Cas_2022-02-22_203833.nc nspec,nchan=236,4096 r:1 inp:0 pix:4 time_offset:-0.030000 r:1 inp:1 pix:5 time_offset:-0.030000 r:1 inp:2 pix:6 time_offset:-0.030000 r:1 inp:3 pix:7 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach2/roach2_94049_0_1_R-Cas_2022-02-22_203833.nc nspec,nchan=240,4096 r:2 inp:0 pix:8 time_offset:-0.030000 r:2 inp:1 pix:9 time_offset:-0.030000 r:2 inp:2 pix:10 time_offset:-0.030000 r:2 inp:3 pix:11 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach3/roach3_94049_0_1_R-Cas_2022-02-22_203833.nc nspec,nchan=248,4096 r:3 inp:0 pix:12 time_offset:-0.030000 r:3 inp:1 pix:13 time_offset:-0.030000 r:3 inp:2 pix:14 time_offset:-0.030000 r:3 inp:3 pix:15 time_offset:-0.030000 TSYS[0] = 83.1205 +/- 27.2975 (4096 channels) TSYS[1] = 84.409 +/- 2.73415 (4096 channels) TSYS[2] = 87.2073 +/- 7.81671 (4096 channels) TSYS[3] = 89.594 +/- 10.365 (4096 channels) TSYS[4] = 92.0273 +/- 3.93699 (4096 channels) TSYS[5] = 97.2304 +/- 2.9342 (4096 channels) TSYS[6] = 87.0181 +/- 5.14242 (4096 channels) TSYS[7] = 93.1734 +/- 1.71328 (4096 channels) TSYS[8] = 122.855 +/- 5.17329 (4096 channels) TSYS[9] = 84.163 +/- 9.39777 (4096 channels) TSYS[10] = 94.5243 +/- 4.00746 (4096 channels) TSYS[11] = 90.588 +/- 5.57813 (4096 channels) TSYS[12] = 109.961 +/- 4.29263 (4096 channels) TSYS[13] = 83.0138 +/- 4.59954 (4096 channels) TSYS[14] = 90.656 +/- 6.09095 (4096 channels) TSYS[15] = 91.7582 +/- 10.3229 (4096 channels) Spectral Band velocity range: 684.293 -705.815 km/s Total Number of OTF Spectra = 28284 NSPEC: 28284 NCHAN: 2062 FAST_NC: True Looping over 16 pixel list [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]: Processing 1 CAL's for Tsys Pix Nspec Mean Std MAD_std Min Max RMS_max Warnings TSYS[0] slice: 89.688 (3.52224) minmax: 79.9597 97.2449 0 1763 0.001 1.099 1.060 -5.756 81.941 1.073 1.154 TSYS[1] slice: 86.3729 (1.70037) minmax: 82.9337 90.1803 1 1763 0.003 1.027 0.988 -5.150 96.664 0.990 1.073 TSYS[2] slice: 90.9314 (2.53313) minmax: 80.288 95.0258 2 1763 0.004 1.077 1.041 -5.518 86.654 1.048 1.112 TSYS[3] slice: 93.8664 (1.84931) minmax: 87.498 97.728 3 1763 0.005 1.126 1.075 -5.333 97.034 1.081 1.153 TSYS[4] slice: 94.2305 (0.803464) minmax: 91.8577 96.7259 4 1768 0.003 1.100 1.052 -5.279 100.022 1.060 1.133 TSYS[5] slice: 96.0242 (2.48753) minmax: 90.7774 100.903 5 1768 -0.004 1.156 1.115 -5.786 77.743 1.127 1.263 TSYS[6] slice: 89.1225 (2.1688) minmax: 83.4721 92.7186 6 1768 0.006 1.063 1.011 -5.386 87.564 1.022 1.089 TSYS[7] slice: 92.9336 (1.92098) minmax: 88.4012 96.903 7 1768 0.006 1.104 1.058 -5.519 92.643 1.066 1.133 TSYS[8] slice: 121.845 (4.09058) minmax: 109.459 130.255 8 1776 0.012 1.450 1.386 -10.376 122.130 1.432 1.650 *M 1.3 TSYS[9] slice: 87.9306 (2.6961) minmax: 82.0503 92.425 9 1776 0.006 1.075 1.029 -5.630 107.647 1.042 1.102 TSYS[10] slice: 95.9114 (2.00353) minmax: 91.0751 99.3975 10 1776 0.006 1.133 1.083 -5.548 97.340 1.090 1.154 TSYS[11] slice: 92.2484 (2.90714) minmax: 84.9232 97.7719 11 1776 0.005 1.165 1.114 -6.368 75.333 1.136 1.212 TSYS[12] slice: 108.316 (3.67907) minmax: 101.434 116.021 12 1764 -0.002 1.294 1.257 -18.949 43.226 1.285 1.507 TSYS[13] slice: 81.7681 (4.35182) minmax: 75.4073 119.242 13 1764 0.060 1.046 1.031 -13.232 30.019 1.010 1.262 *M 1.3 TSYS[14] slice: 92.3578 (3.28234) minmax: 83.4454 97.2423 14 1764 0.007 1.144 1.079 -5.495 101.143 1.090 1.161 TSYS[15] slice: 95.4526 (4.82885) minmax: 79.4638 101.481 15 1764 0.007 1.208 1.134 -6.074 106.465 1.147 1.238 CPU TIME: 18.898 sec CPU TIME: 19.0163 sec Warnings: *P ratio: ratio of std/mad too high for data *M ratio: ratio of std/mad too high for RMS X-range: -151.858 154.112 Y-range: -154.646 150.002 arcsec Written R-Cas_94050.nc LMTOY>> view_spec_file {'--help': False, '--input': 'R-Cas_94050.nc', '--pix_list': '0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15', '--plot_range': '-1,3', '--plots': 'R-Cas_94050_specviews', '--rms_cut': '-4', '--show_pixel': None, '--skip_tsys': False} SLR Plots initialized with 1 method=R-Cas_94050_specviews Max sequence=1776 Plots saving in R-Cas_94050_specviews.1.png (overwriting the old one) Plots saving in R-Cas_94050_specviews.2.png (overwriting the old one) Plots saving in R-Cas_94050_specviews.3.png (overwriting the old one) Plots saving in R-Cas_94050_specviews.4.png (overwriting the old one) Plots saving in R-Cas_94050_specviews.5.png (overwriting the old one) NEW TSYS PIC SHAPE (1, 16, 2062) PIXEL: 0 [ 0 1 2 ... 1760 1761 1762] PIXEL: 1 [1763 1764 1765 ... 3523 3524 3525] PIXEL: 2 [3526 3527 3528 ... 5286 5287 5288] PIXEL: 3 [5289 5290 5291 ... 7049 7050 7051] PIXEL: 4 [7052 7053 7054 ... 8817 8818 8819] PIXEL: 5 [ 8820 8821 8822 ... 10585 10586 10587] PIXEL: 6 [10588 10589 10590 ... 12353 12354 12355] PIXEL: 7 [12356 12357 12358 ... 14121 14122 14123] PIXEL: 8 [14124 14125 14126 ... 15897 15898 15899] PIXEL: 9 [15900 15901 15902 ... 17673 17674 17675] PIXEL: 10 [17676 17677 17678 ... 19449 19450 19451] PIXEL: 11 [19452 19453 19454 ... 21225 21226 21227] PIXEL: 12 [21228 21229 21230 ... 22989 22990 22991] PIXEL: 13 [22992 22993 22994 ... 24753 24754 24755] PIXEL: 14 [24756 24757 24758 ... 26517 26518 26519] PIXEL: 15 [26520 26521 26522 ... 28281 28282 28283] Plots saving in R-Cas_94050_specviews.6.png (overwriting the old one) /lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray. a.partition(kth, axis=axis, kind=kind, order=order) SLR Plots initialized with 3 method=R-Cas_94050_specpoint,png,1 MAD: 0 1.0728452 0.02078461896136508 1.1559836964112562 MAD: 1 0.9900301 0.019057074250158762 1.06625840688299 MAD: 2 1.0483544 0.01988766367880617 1.12790504199855 MAD: 3 1.0818622 0.02138553481569026 1.167404350490178 MAD: 4 1.0594379 0.01984966458801796 1.138836529331381 MAD: 5 1.1226201 0.028776888193868564 1.2377276585188826 MAD: 6 1.0223211 0.01972868608734573 1.1012358493527399 MAD: 7 1.0659742 0.019207038103804325 1.1428023879498852 MAD: 8 1.422856 0.036911344721902814 1.5705013521313247 MAD: 9 1.0421176 0.02046657540846562 1.12398389730647 MAD: 10 1.090786 0.02034586201772912 1.172169428295526 MAD: 11 1.1354487 0.0224201705248725 1.225129376328616 MAD: 12 1.2746613 0.041481928383895854 1.4405890161021118 MAD: 13 1.0031873 0.030604290980867154 1.1256044626981878 MAD: 14 1.0894666 0.0207961954285587 1.1726513535220962 MAD: 15 1.1479101 0.02195269333819894 1.235720891455823 Plots saving in R-Cas_94050_specpoint.1.png (overwriting the old one) /lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray. a.partition(kth, axis=axis, kind=kind, order=order) SLR Plots initialized with 3 method=R-Cas_94050_specpoint,png,2 MAD: 0 1.0728452 0.02078461896136508 1.1559836964112562 MAD: 1 0.9900301 0.019057074250158762 1.06625840688299 MAD: 2 1.0483544 0.01988766367880617 1.12790504199855 MAD: 3 1.0818622 0.02138553481569026 1.167404350490178 MAD: 4 1.0594379 0.01984966458801796 1.138836529331381 MAD: 5 1.1226201 0.028776888193868564 1.2377276585188826 MAD: 6 1.0223211 0.01972868608734573 1.1012358493527399 MAD: 7 1.0659742 0.019207038103804325 1.1428023879498852 MAD: 8 1.422856 0.036911344721902814 1.5705013521313247 MAD: 9 1.0421176 0.02046657540846562 1.12398389730647 MAD: 10 1.090786 0.02034586201772912 1.172169428295526 MAD: 11 1.1354487 0.0224201705248725 1.225129376328616 MAD: 12 1.2746613 0.041481928383895854 1.4405890161021118 MAD: 13 1.0031873 0.030604290980867154 1.1256044626981878 MAD: 14 1.0894666 0.0207961954285587 1.1726513535220962 MAD: 15 1.1479101 0.02195269333819894 1.235720891455823 Plots saving in R-Cas_94050_specpoint.2.png (overwriting the old one) LMTOY>> make_spec_fits (waterfall) pix [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15] Min nsamp 1763 Binning [1, 1] FITS file will be 1763 x 2062 x 16 Written waterfall cube to R-Cas_94050.wf.fits pix [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15] Min nsamp 1763 Binning [10, 1] FITS file will be 176 x 2062 x 16 New shape: (16, 2062, 176) Written waterfall cube to R-Cas_94050.wf10.fits LMTOY>> grid_data {'--cell': '7.5', '--edge': '0', '--help': False, '--input': 'R-Cas_94050.nc', '--n_samples': '256', '--noise_sigma': '1', '--otf_a': '1.1', '--otf_b': '4.75', '--otf_c': '2', '--otf_select': '1', '--output': 'R-Cas_94050.fits', '--pix_list': '0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15', '--program_path': 'spec_driver_fits', '--resolution': '15', '--rmax': '3', '--rms_cut': '-4', '--sample': '-1', '--weight': 'R-Cas_94050.wt.fits', '--x_extent': '96', '--y_extent': '96'} Removing R-Cas_94050.fits Removing R-Cas_94050.wt.fits STDOUT **************************** spec_driver_fits LMTSLR 4-mar-2022 CMD: spec_driver_fits -i R-Cas_94050.nc -o R-Cas_94050.fits -w R-Cas_94050.wt.fits -l 15 -c 7.5 -u [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15] -z -4 -s 1 -x 96 -y 96 -f 1 -r 3 -n 256 -0 1.1 -1 4.75 -2 2 -b -1 -e 0 file list=R-Cas_94050.nc DEBUG:7.5 sample_list=-1 Warning: sample list is not a multiple of 3 nsamples=1 Processing 1 SpecFiles: Opening SpecFile file R-Cas_94050.nc file: R-Cas_94050.nc nspec= 28284 nchan= 2062 SpecFile version 6-mar-2021 X-range: -151.858 154.112 Y-range: -154.646 150.002 arcsec X-ramp: -68.4584 70.7115 Y-ramp: -71.2456 66.6024 arcsec MapSize: 305.97 x 304.648 arcsec 94050 R-Cas DATE-OBS 2022-02-22T15:39:00 CF.n_cells= 7 delta=0.176471 cell=7.5 resol=15 oft_select=1 C-AXIS 2 starts at -325.954 C-AXIS 1 starts at -97.5 C-AXIS 0 starts at -97.5 P-AXIS 1 starts at -97.5 P-AXIS 0 starts at -97.5 P-AXIS 1 starts at -97.5 P-AXIS 0 starts at -97.5 WARNING fuzzy_edge=0 pixel: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 used?: 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 rms_stats: n=28284 rms_cutoff=-4 Cube Completed, 28182/28284 Spectra accepted = 0.996 Weighting Completed, fuzzy_edge=0 Weight at 0.000000 0.000000 is 39.829838 write to R-Cas_94050.fits write weights to R-Cas_94050.wt.fits STDERR **************************** Exit Code: 0 LMTOY>> Some NEMO post-processing ### nemo Debug Info: FITS file: Image size 27 27 2062 ### Warning [fitsccd]: Setting map minimum from 0 to -2.98027 ### Warning [fitsccd]: Setting map maximum from 0 to 79.866 ### nemo Debug Info: There were no blank values set in the image ### nemo Debug Info: FITS file: Image size 27 27 ### Warning [fitsccd]: Setting map minimum from 0 to 6.78022 ### Warning [fitsccd]: Setting map maximum from 0 to 69.9867 ### nemo Debug Info: There were no blank values set in the image LMTOY>> STATS R-Cas_94050.ccd centerbox robust ### Warning [ccdsub]: Sampling will be done ### Warning [ccdsub]: Attempting to fix the WCS ### nemo Debug Info: WCS Corner: -0.0125 0.0125 -325954 Number of points : 404152 Min and Max : -2.339362 79.866013 Mean and dispersion : 0.025434 0.613946 Skewness and kurtosis : 60.327605 5027.315763 Sum and Sum*Dx*Dy*Dz* : 10279.228580 -15.145113 Points per beam (map) : 1 N Robust : 398630 Mean Robust : 0.005673 Sigma Robust : 0.143478 Median Robust : 0.004825 0/404152 out-of-range points discarded LMTOY>> STATS R-Cas_94050.wt.ccd centerbox robust ### Warning [ccdsub]: Sampling will be done ### Warning [ccdsub]: Attempting to fix the WCS ### nemo Debug Info: WCS Corner: -0.0125 0.0125 0 Number of points : 196 Min and Max : 33.977486 69.986679 Mean and dispersion : 40.645307 6.301340 Skewness and kurtosis : 2.365324 5.553128 Sum and Sum*Dx*Dy* : 7966.480198 -0.034577 Points per beam (map) : 1 N Robust : 174 Mean Robust : 38.691348 Sigma Robust : 2.446688 Median Robust : 38.193258 0/196 out-of-range points discarded ### nemo Debug Info: Keeping 27*27*2062 cube ### Warning [ccdfits]: Replacing header from R-Cas_94050.wt.fits SLABS: [[-326,-76],[124,374]] == -326,-76,124,374 ### Warning [ccdslice]: axis=1 not fully supported yet ### nemo Debug Info: Axis: 2062 0 -325954 339.465 ### nemo Debug Info: Axis min/max: -325954 373683 ### nemo Debug Info: slab -326 -76 -> 0 736 ### nemo Debug Info: slab 124 374 -> 1325 2061 ### nemo Debug Info: Total planes: 1474 ### Warning [ccdslice]: Code not converted to fix reference pixel value ### Warning [ccdfits]: Replacing header from R-Cas_94050.wt.fits ### Warning [ccdfits]: Replacing header from R-Cas_94050.wt.fits ### Warning [ccdfits]: Replacing header from R-Cas_94050.fits QAC_STATS: R-Cas_94050-full 0.00915716 0.353468 -2.98027 79.866 13765 0.0660786 ### Warning [ccdsub]: Sampling will be done ### Warning [ccdsub]: Attempting to fix the WCS ### nemo Debug Info: WCS Corner: -0.0125 0.0125 -325954 QAC_STATS: R-Cas_94050-cent 0.0254341 0.613946 -2.33936 79.866 10279.2 0.185299 ### nemo Debug Info: FITS file: Image size 27 27 2062 ### Warning [fitsccd]: Setting map minimum from 0 to -0.141199 ### Warning [fitsccd]: Setting map maximum from 0 to 16.9466 ### nemo Debug Info: There were no blank values set in the image spectab : # 13 13 2062 min/mean/sig/max -0.468938 0.241452 2.73439 56.1403 -7.21058e-05 0.750419 0.194057 specstab: # 13 13 2062 min/mean/sig/max -0.0637378 0.0806655 0.856531 15.621 -6.60452e-06 0.170696 0.140918 Traceback (most recent call last): File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in f = aplpy.FITSFigure(fitsfile) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper return f(*args, **kwargs) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__ self._get_hdu(data, hdu, north, convention=convention, File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu raise IOError("File not found: " + filename) OSError: File not found: R-Cas_94050.mom0.fits Traceback (most recent call last): File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in f = aplpy.FITSFigure(fitsfile) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper return f(*args, **kwargs) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__ self._get_hdu(data, hdu, north, convention=convention, File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu raise IOError("File not found: " + filename) OSError: File not found: R-Cas_94050.mom1.fits Traceback (most recent call last): File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in f = aplpy.FITSFigure(fitsfile) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper return f(*args, **kwargs) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__ self._get_hdu(data, hdu, north, convention=convention, File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu raise IOError("File not found: " + filename) OSError: File not found: R-Cas_94050.mom2.fits INFO: Auto-setting vmin to 2.911e+00 [aplpy.core] INFO: Auto-setting vmax to 7.030e+01 [aplpy.core] INFO: Auto-setting vmin to 2.911e+00 [aplpy.core] INFO: Auto-setting vmax to 7.030e+01 [aplpy.core] Writing R-Cas_94050.wt.png INFO: Auto-setting vmin to -5.529e+00 [aplpy.core] INFO: Auto-setting vmax to 9.931e+01 [aplpy.core] INFO: Auto-setting vmin to -5.529e+00 [aplpy.core] INFO: Auto-setting vmax to 9.931e+01 [aplpy.core] Writing R-Cas_94050.wt2.png INFO: Auto-setting vmin to 1.760e+00 [aplpy.core] INFO: Auto-setting vmax to 9.242e+01 [aplpy.core] INFO: Auto-setting vmin to 1.760e+00 [aplpy.core] INFO: Auto-setting vmax to 9.242e+01 [aplpy.core] Writing R-Cas_94050.wt3.png Traceback (most recent call last): File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in f = aplpy.FITSFigure(fitsfile) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper return f(*args, **kwargs) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__ self._get_hdu(data, hdu, north, convention=convention, File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu raise IOError("File not found: " + filename) OSError: File not found: R-Cas_94050.wtn.fits INFO: Auto-setting vmin to -8.804e-01 [aplpy.core] INFO: Auto-setting vmax to 1.609e+01 [aplpy.core] INFO: Auto-setting vmin to -8.804e-01 [aplpy.core] INFO: Auto-setting vmax to 1.609e+01 [aplpy.core] Writing R-Cas_94050.wtr.png WARNING: FITSFixedWarning: RADECSYS= 'FK5 ' / the RADECSYS keyword is deprecated, use RADESYSa. [astropy.wcs.wcs] INFO: Setting slices=[0] [aplpy.core] INFO: Auto-setting vmin to -5.612e+04 [aplpy.core] INFO: Auto-setting vmax to 1.548e+05 [aplpy.core] INFO: Auto-setting vmin to -5.612e+04 [aplpy.core] INFO: Auto-setting vmax to 1.548e+05 [aplpy.core] Writing R-Cas_94050.mom0.png LMTOY>> Created R-Cas_94050.nf.fits and R-Cas_94050.nfs.fits LMTOY>> skipping ADMIT post-processing LMTOY>> Created R-Cas_94050.fits and R-Cas_94050.wt.fits LMTOY>> Parameter file used: lmtoy_94050.rc LMTOY>> Making summary index.html: Making index.html for obsnum=94050 R-Cas_94050 R-Cas_94050_specviews R-Cas_94050_specpoint Writing index.html Writing index_pipeline.html Writing index_admit.html Writing index_pars.html Writing index_log.html