LMTOY>> seq_pipeline: 2-feb-2022 LMTOY>> READING lmtoy_functions 11-mar-2022 via /lma1/teuben/lmtoy/examples/seq_pipeline.sh Working directory ./2022S1SEQUOIACommissioning/94051 LMTOY>> reading lmtoy_94051.rc LMTOY>> updating /lma1/teuben/lmtoy/examples/lmtoy_functions.sh: line 175: ifproc.sh: command not found LMTOY>> process_otf_map2 in 2 seconds Traceback (most recent call last): File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/ifproc/ifproc.py", line 538, in __init__ self.chop = self.nc.variables['Data.Msip1mm.BeamChopperActPos'][:] KeyError: 'Data.Msip1mm.BeamChopperActPos' Traceback (most recent call last): File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/ifproc/ifproc.py", line 668, in __init__ self.chop = self.nc.variables['Data.Msip1mm.BeamChopperActPos'][:] KeyError: 'Data.Msip1mm.BeamChopperActPos' /lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray. a.partition(kth, axis=axis, kind=kind, order=order) /lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:549: RuntimeWarning: invalid value encountered in true_divide self.tsys_spectrum = 280 * sky_spectrum / (hot_spectrum - /lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:549: RuntimeWarning: divide by zero encountered in true_divide self.tsys_spectrum = 280 * sky_spectrum / (hot_spectrum - /lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:394: RuntimeWarning: invalid value encountered in true_divide spectra.append((self.raw_spec[i,:] - ref) / ref) /lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:394: RuntimeWarning: divide by zero encountered in true_divide spectra.append((self.raw_spec[i,:] - ref) / ref) /lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/spec.py:436: RuntimeWarning: invalid value encountered in multiply self.reduced_spectra = np.array(spectra) * tsys_spectrum {'--b_order': '0', '--b_regions': '[[-326,-76],[124,374]]', '--bank': '0', '--eliminate_list': '0', '--help': False, '--l_regions': '[[-76,124]]', '--obsnum': '94051', '--output': 'R-Cas_94051.nc', '--path': '/n/lma1/lmt/data_lmt/', '--pix_list': '0,1,2,3,4,6,7,9,10,11,14,15', '--restfreq': None, '--sample': None, '--save_tsys': False, '--slice': '[-326,374]', '--stype': '2', '--tsys': '250.0', '--use_cal': True, '--use_otf_cal': False, '--x_axis': 'VLSR'} program process_otf_map options output_file_name = R-Cas_94051.nc tsys = 250.0 eliminate_list = [0] data_path = /n/lma1/lmt/data_lmt/ bank = 0 b_regions = [[-326, -76], [124, 374]] use_otf_cal = False obsnum = 94051 b_order = 0 l_regions = [[-76, 124]] use_cal = True pix_list = [0, 1, 2, 3, 4, 6, 7, 9, 10, 11, 14, 15] x_axis = VLSR output = R-Cas_94051.nc stype = 2 path = /n/lma1/lmt/data_lmt/ slice = [-326, 374] 2022-02-22T15:49:24 begin /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094051_00_0001.nc 2022-02-22T15:58:05 end /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094051_00_0001.nc BufPos 3 4.2 sec 94051 BufPos 2 4.1 sec 94051 BufPos 1 20.9 sec 94051 BufPos 0 50.7 sec 94051 BufPos 1 21.7 sec 94051 BufPos 0 51.9 sec 94051 BufPos 1 22.0 sec 94051 BufPos 0 51.1 sec 94051 BufPos 1 22.2 sec 94051 BufPos 0 51.1 sec 94051 BufPos 1 23.8 sec 94051 BufPos 0 51.9 sec 94051 BufPos 1 20.7 sec 94051 BufPos 0 52.3 sec 94051 BufPos 1 20.7 sec 94051 BufPos 0 36.8 sec 94051 BufPos 1 15.1 sec 94051 before read npix from pixels npix = 16 from xlen npix = 16 /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094051_00_0001.nc does not have map parameters /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094051_00_0001.nc does not have bs parameters WARNING: ObsPgm type Lissajous for Obsum 94051 is not identified PJT map_coord 0 get chop 'Data.Msip1mm.BeamChopperActPos' no chop 2022-02-22T15:39:00 begin /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094050_00_0001.nc 2022-02-22T15:45:53 end /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094050_00_0001.nc BufPos 3 4.3 sec 94050 BufPos 2 4.6 sec 94050 BufPos 1 16.7 sec 94050 BufPos 0 53.8 sec 94050 BufPos 1 32.0 sec 94050 BufPos 0 55.4 sec 94050 BufPos 1 32.4 sec 94050 BufPos 0 54.7 sec 94050 BufPos 1 31.9 sec 94050 BufPos 0 52.2 sec 94050 BufPos 1 18.4 sec 94050 BufPos 3 4.6 sec 94050 BufPos 2 4.2 sec 94050 BufPos 1 17.0 sec 94050 BufPos 0 21.5 sec 94050 BufPos 1 10.1 sec 94050 before read npix from pixels npix = 16 from xlen npix = 16 Map Parameters: L Continuous HPBW= 16.0 XLength= 96.0 YLength= 96.0 XStep= 1.00 YStep= 0.50 /n/lma1/lmt/data_lmt/ifproc/ifproc_2022-02-22_094050_00_0001.nc does not have bs parameters WARNING: 94050 is NOT a Cal observation : Map get chop cal 'Data.Msip1mm.BeamChopperActPos' no chop cal read_roach /n/lma1/lmt/data_lmt/spectrometer/roach0/roach0_94051_0_1_R-Cas_2022-02-22_204915.nc nspec,nchan=15516,4096 r:0 inp:0 pix:0 time_offset:-0.030000 r:0 inp:1 pix:1 time_offset:-0.030000 r:0 inp:2 pix:2 time_offset:-0.030000 r:0 inp:3 pix:3 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach1/roach1_94051_0_1_R-Cas_2022-02-22_204915.nc nspec,nchan=15672,4096 r:1 inp:0 pix:4 time_offset:-0.030000 r:1 inp:2 pix:6 time_offset:-0.030000 r:1 inp:3 pix:7 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach2/roach2_94051_0_1_R-Cas_2022-02-22_204915.nc nspec,nchan=15580,4096 r:2 inp:1 pix:9 time_offset:-0.030000 r:2 inp:2 pix:10 time_offset:-0.030000 r:2 inp:3 pix:11 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach3/roach3_94051_0_1_R-Cas_2022-02-22_204915.nc nspec,nchan=15632,4096 r:3 inp:2 pix:14 time_offset:-0.030000 r:3 inp:3 pix:15 time_offset:-0.030000 RESTFREQ 86.2434 GHz read_roach /n/lma1/lmt/data_lmt/spectrometer/roach0/roach0_94050_0_1_R-Cas_2022-02-22_203851.nc nspec,nchan=11524,4096 r:0 inp:0 pix:0 time_offset:-0.030000 r:0 inp:1 pix:1 time_offset:-0.030000 r:0 inp:2 pix:2 time_offset:-0.030000 r:0 inp:3 pix:3 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach1/roach1_94050_0_1_R-Cas_2022-02-22_203851.nc nspec,nchan=11612,4096 r:1 inp:0 pix:4 time_offset:-0.030000 r:1 inp:2 pix:6 time_offset:-0.030000 r:1 inp:3 pix:7 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach2/roach2_94050_0_1_R-Cas_2022-02-22_203851.nc nspec,nchan=11692,4096 r:2 inp:1 pix:9 time_offset:-0.030000 r:2 inp:2 pix:10 time_offset:-0.030000 r:2 inp:3 pix:11 time_offset:-0.030000 read_roach /n/lma1/lmt/data_lmt/spectrometer/roach3/roach3_94050_0_1_R-Cas_2022-02-22_203851.nc nspec,nchan=11672,4096 r:3 inp:2 pix:14 time_offset:-0.030000 r:3 inp:3 pix:15 time_offset:-0.030000 TSYS[0] = 86.6365 +/- 23.0277 (4096 channels) TSYS[1] = 90.6657 +/- 2.7602 (4096 channels) TSYS[2] = 90.6852 +/- 7.85183 (4096 channels) TSYS[3] = 93.0626 +/- 10.4964 (4096 channels) TSYS[4] = 97.3952 +/- 2.76451 (4096 channels) TSYS[6] = 90.1223 +/- 5.11417 (4096 channels) TSYS[7] = 96.4343 +/- 1.71517 (4096 channels) TSYS[9] = 88.3121 +/- 10.0414 (4096 channels) TSYS[10] = 98.0296 +/- 4.0159 (4096 channels) TSYS[11] = 95.0491 +/- 5.23204 (4096 channels) TSYS[14] = 94.0559 +/- 6.08273 (4096 channels) TSYS[15] = 95.1734 +/- 10.3818 (4096 channels) Spectral Band velocity range: 684.293 -705.815 km/s Total Number of OTF Spectra = 32453 NSPEC: 32453 NCHAN: 2062 FAST_NC: True Looping over 12 pixel list [0, 1, 2, 3, 4, 6, 7, 9, 10, 11, 14, 15]: Processing 1 CAL's for Tsys Pix Nspec Mean Std MAD_std Min Max RMS_max Warnings TSYS[0] slice: 92.8424 (2.75256) minmax: 84.1811 98.4396 0 2700 0.014 1.228 1.093 -5.507 92.513 1.109 1.175 TSYS[1] slice: 91.919 (2.08483) minmax: 86.1358 96.7786 1 2700 0.018 1.210 1.045 -5.507 97.652 1.050 1.119 TSYS[2] slice: 94.4191 (2.56924) minmax: 83.4516 98.7651 2 2700 0.016 1.242 1.080 -5.695 93.903 1.086 1.158 TSYS[3] slice: 97.3714 (1.86105) minmax: 91.092 101.505 3 2700 0.017 1.300 1.115 -5.507 99.170 1.119 1.192 TSYS[4] slice: 99.0401 (0.809596) minmax: 96.8654 101.63 4 2716 0.016 1.229 1.100 -5.957 93.269 1.108 1.184 TSYS[6] slice: 92.2142 (2.14625) minmax: 86.4974 96.1006 6 2716 0.013 1.134 1.045 -5.150 84.605 1.054 1.129 TSYS[7] slice: 96.1692 (1.91384) minmax: 91.0083 100.219 7 2716 0.019 1.266 1.093 -5.756 97.860 1.102 1.176 TSYS[9] slice: 92.2683 (2.97722) minmax: 85.6307 97.4846 9 2701 0.016 1.208 1.079 -5.956 104.046 1.089 1.160 TSYS[10] slice: 99.4062 (2.04942) minmax: 94.2338 103.063 10 2701 0.014 1.226 1.121 -5.631 100.312 1.127 1.215 TSYS[11] slice: 96.6214 (2.74041) minmax: 88.8335 102.329 11 2701 0.017 1.316 1.164 -6.011 101.722 1.186 1.257 TSYS[14] slice: 95.7501 (3.27724) minmax: 86.7381 101.056 14 2701 0.015 1.278 1.118 -6.011 108.896 1.126 1.203 TSYS[15] slice: 98.8811 (4.84593) minmax: 82.3261 104.941 15 2701 0.018 1.378 1.173 -5.926 111.019 1.184 1.248 CPU TIME: 21.6415 sec Traceback (most recent call last): File "/lma1/teuben/lmtoy/anaconda3/bin/process_otf_map2.py", line 7, in exec(compile(f.read(), __file__, 'exec')) File "/lma1/teuben/lmtoy/SpectralLineReduction/bin/process_otf_map2.py", line 110, in main(sys.argv[1:]) File "/lma1/teuben/lmtoy/SpectralLineReduction/bin/process_otf_map2.py", line 105, in main specfile.write_ncdata() File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/specfile.py", line 345, in write_ncdata self._create_nc_data() File "/lma1/teuben/lmtoy/SpectralLineReduction/lmtslr/spec/specfile.py", line 306, in _create_nc_data nc_tsys[:,:,:] = tmp_tsys[:,:,:] File "src/netCDF4/_netCDF4.pyx", line 4918, in netCDF4._netCDF4.Variable.__setitem__ File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/netCDF4/utils.py", line 365, in _StartCountStride datashape = broadcasted_shape(shape, datashape) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/netCDF4/utils.py", line 973, in broadcasted_shape return np.broadcast(a, b).shape ValueError: shape mismatch: objects cannot be broadcast to a single shape LMTOY>> view_spec_file {'--help': False, '--input': 'R-Cas_94051.nc', '--pix_list': '0,1,2,3,4,6,7,9,10,11,14,15', '--plot_range': '-1,3', '--plots': 'R-Cas_94051_specviews', '--rms_cut': '-4', '--show_pixel': None, '--skip_tsys': False} SLR Plots initialized with 1 method=R-Cas_94051_specviews Max sequence=2716 Plots saving in R-Cas_94051_specviews.1.png (overwriting the old one) Plots saving in R-Cas_94051_specviews.2.png (overwriting the old one) Plots saving in R-Cas_94051_specviews.3.png (overwriting the old one) Plots saving in R-Cas_94051_specviews.4.png (overwriting the old one) Plots saving in R-Cas_94051_specviews.5.png (overwriting the old one) NEW TSYS PIC SHAPE (1, 12, 2062) PIXEL: 0 [ 0 1 2 ... 2697 2698 2699] PIXEL: 1 [2700 2701 2702 ... 5397 5398 5399] PIXEL: 2 [5400 5401 5402 ... 8097 8098 8099] PIXEL: 3 [ 8100 8101 8102 ... 10797 10798 10799] PIXEL: 4 [10800 10801 10802 ... 13513 13514 13515] PIXEL: 6 [13516 13517 13518 ... 16229 16230 16231] PIXEL: 7 [16232 16233 16234 ... 18945 18946 18947] PIXEL: 9 [18948 18949 18950 ... 21646 21647 21648] PIXEL: 10 [21649 21650 21651 ... 24347 24348 24349] PIXEL: 11 [24350 24351 24352 ... 27048 27049 27050] PIXEL: 14 [27051 27052 27053 ... 29749 29750 29751] PIXEL: 15 [29752 29753 29754 ... 32450 32451 32452] Plots saving in R-Cas_94051_specviews.6.png (overwriting the old one) /lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray. a.partition(kth, axis=axis, kind=kind, order=order) SLR Plots initialized with 3 method=R-Cas_94051_specpoint,png,1 MAD: 0 1.1087517 0.021203404289842586 1.1935652717843093 MAD: 1 1.0498179 0.02042442292868428 1.1315156114458773 MAD: 2 1.0853701 0.02019704697380506 1.1661582516769586 MAD: 3 1.1190104 0.02133993590674441 1.2043701920827883 MAD: 4 1.1082698 0.020914080979980727 1.1919261345964975 MAD: 6 1.0548682 0.020600809405924438 1.1372714589066568 MAD: 7 1.1018099 0.020541866630213422 1.1839773257966715 MAD: 9 1.088975 0.021310420333899613 1.1742166340333524 MAD: 10 1.1270876 0.022221161333116572 1.2159722384110796 MAD: 11 1.1861669 0.022038412217418854 1.274320531384629 MAD: 14 1.1257118 0.02036309416355168 1.2071641753221145 MAD: 15 1.184436 0.021968069714471378 1.272308242488562 Plots saving in R-Cas_94051_specpoint.1.png (overwriting the old one) /lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/numpy/core/fromnumeric.py:748: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray. a.partition(kth, axis=axis, kind=kind, order=order) SLR Plots initialized with 3 method=R-Cas_94051_specpoint,png,2 MAD: 0 1.1087517 0.021203404289842586 1.1935652717843093 MAD: 1 1.0498179 0.02042442292868428 1.1315156114458773 MAD: 2 1.0853701 0.02019704697380506 1.1661582516769586 MAD: 3 1.1190104 0.02133993590674441 1.2043701920827883 MAD: 4 1.1082698 0.020914080979980727 1.1919261345964975 MAD: 6 1.0548682 0.020600809405924438 1.1372714589066568 MAD: 7 1.1018099 0.020541866630213422 1.1839773257966715 MAD: 9 1.088975 0.021310420333899613 1.1742166340333524 MAD: 10 1.1270876 0.022221161333116572 1.2159722384110796 MAD: 11 1.1861669 0.022038412217418854 1.274320531384629 MAD: 14 1.1257118 0.02036309416355168 1.2071641753221145 MAD: 15 1.184436 0.021968069714471378 1.272308242488562 Plots saving in R-Cas_94051_specpoint.2.png (overwriting the old one) LMTOY>> make_spec_fits (waterfall) pix [0, 1, 2, 3, 4, 6, 7, 9, 10, 11, 14, 15] Min nsamp 2700 Binning [1, 1] FITS file will be 2700 x 2062 x 12 Written waterfall cube to R-Cas_94051.wf.fits pix [0, 1, 2, 3, 4, 6, 7, 9, 10, 11, 14, 15] Min nsamp 2700 Binning [10, 1] FITS file will be 270 x 2062 x 12 New shape: (12, 2062, 270) Written waterfall cube to R-Cas_94051.wf10.fits LMTOY>> grid_data {'--cell': '7.5', '--edge': '0', '--help': False, '--input': 'R-Cas_94051.nc', '--n_samples': '256', '--noise_sigma': '1', '--otf_a': '1.1', '--otf_b': '4.75', '--otf_c': '2', '--otf_select': '1', '--output': 'R-Cas_94051.fits', '--pix_list': '0,1,2,3,4,6,7,9,10,11,14,15', '--program_path': 'spec_driver_fits', '--resolution': '15', '--rmax': '3', '--rms_cut': '-4', '--sample': '-1', '--weight': 'R-Cas_94051.wt.fits', '--x_extent': '100', '--y_extent': '100'} Removing R-Cas_94051.fits Removing R-Cas_94051.wt.fits STDOUT **************************** spec_driver_fits LMTSLR 15-mar-2022 CMD: spec_driver_fits -i R-Cas_94051.nc -o R-Cas_94051.fits -w R-Cas_94051.wt.fits -l 15 -c 7.5 -u [0,1,2,3,4,6,7,9,10,11,14,15] -z -4 -s 1 -x 100 -y 100 -f 1 -r 3 -n 256 -0 1.1 -1 4.75 -2 2 -b -1 -e 0 file list=R-Cas_94051.nc DEBUG:7.5 sample_list=-1 Warning: sample list is not a multiple of 3 nsamples=1 Processing 1 SpecFiles: Opening SpecFile file R-Cas_94051.nc file: R-Cas_94051.nc nspec= 32453 nchan= 2062 SpecFile version 4-mar-2022 dev X-range: -94.4732 111.16 Y-range: -107.365 109.21 arcsec X-ramp: -11.0732 27.7603 Y-ramp: -23.9653 25.8099 arcsec MapSize: 205.634 x 216.575 arcsec 94051 R-Cas DATE-OBS 2022-02-22T15:49:24 CF.n_cells= 7 delta=0.176471 cell=7.5 resol=15 oft_select=1 C-AXIS 2 starts at -325.954 C-AXIS 1 starts at -97.5 C-AXIS 0 starts at -97.5 P-AXIS 1 starts at -97.5 P-AXIS 0 starts at -97.5 P-AXIS 1 starts at -97.5 P-AXIS 0 starts at -97.5 WARNING fuzzy_edge=0 pixel: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 used?: 1 1 1 1 1 0 1 1 0 1 1 1 0 0 1 1 rms_stats: n=32453 rms_cutoff=-4 Cube Completed, 32451/32453 Spectra accepted = 1.000 Weighting Completed, fuzzy_edge=0 Weight at 0.000000 0.000000 is 143.380219 write to R-Cas_94051.fits write weights to R-Cas_94051.wt.fits STDERR **************************** Exit Code: 0 LMTOY>> Some NEMO post-processing ### nemo Debug Info: FITS file: Image size 27 27 2062 ### Warning [fitsccd]: Setting map minimum from 0 to -54.958 ### Warning [fitsccd]: Setting map maximum from 0 to 76.5987 ### nemo Debug Info: There were 152588 blank values in the image (10.150892 %) ### nemo Debug Info: FITS file: Image size 27 27 ### Warning [fitsccd]: Setting map minimum from 0 to -3.40404 ### Warning [fitsccd]: Setting map maximum from 0 to 199.188 ### nemo Debug Info: There were no blank values set in the image LMTOY>> STATS R-Cas_94051.ccd centerbox robust ### Warning [ccdsub]: Sampling will be done ### Warning [ccdsub]: Attempting to fix the WCS ### nemo Debug Info: WCS Corner: 114.549 -10.6065 -325954 Number of points : 404152 Min and Max : -0.613791 76.598663 Mean and dispersion : 0.023230 0.661629 Skewness and kurtosis : 61.407489 4954.643186 Sum and Sum*Dx*Dy*Dz* : 9388.355867 -13.832527 Points per beam (map) : 1 N Robust : 394151 Mean Robust : 0.000944 Sigma Robust : 0.093260 Median Robust : 0.000780 0/404152 out-of-range points discarded LMTOY>> STATS R-Cas_94051.wt.ccd centerbox robust ### Warning [ccdsub]: Sampling will be done ### Warning [ccdsub]: Attempting to fix the WCS ### nemo Debug Info: WCS Corner: 114.549 -10.6065 0 Number of points : 196 Min and Max : 26.945293 199.188324 Mean and dispersion : 101.830789 37.826800 Skewness and kurtosis : 0.403698 -0.184108 Sum and Sum*Dx*Dy* : 19958.834694 -0.086627 Points per beam (map) : 1 N Robust : 196 Mean Robust : 101.830789 Sigma Robust : 37.826800 Median Robust : 97.079948 0/196 out-of-range points discarded ### nemo Debug Info: Keeping 27*27*2062 cube ### Warning [ccdfits]: Replacing header from R-Cas_94051.wt.fits SLABS: [[-326,-76],[124,374]] == -326,-76,124,374 ### Warning [ccdslice]: axis=1 not fully supported yet ### nemo Debug Info: Axis: 2062 0 -325954 339.465 ### nemo Debug Info: Axis min/max: -325954 373683 ### nemo Debug Info: slab -326 -76 -> 0 736 ### nemo Debug Info: slab 124 374 -> 1325 2061 ### nemo Debug Info: Total planes: 1474 ### Warning [ccdslice]: Code not converted to fix reference pixel value ### Warning [ccdfits]: Replacing header from R-Cas_94051.wt.fits ### Warning [ccdfits]: Replacing header from R-Cas_94051.wt.fits ### Warning [ccdfits]: Replacing header from R-Cas_94051.fits QAC_STATS: R-Cas_94051-full 0.00760187 0.754846 -54.958 76.5987 10267.2 0.0521892 ### Warning [ccdsub]: Sampling will be done ### Warning [ccdsub]: Attempting to fix the WCS ### nemo Debug Info: WCS Corner: 114.549 -10.6065 -325954 QAC_STATS: R-Cas_94051-cent 0.0232298 0.661629 -0.613791 76.5987 9388.36 0.2315 ### nemo Debug Info: FITS file: Image size 27 27 2062 ### Warning [fitsccd]: Setting map minimum from 0 to -0.113457 ### Warning [fitsccd]: Setting map maximum from 0 to 21.9027 ### nemo Debug Info: There were no blank values set in the image spectab : # 13 13 2062 min/mean/sig/max -0.365042 0.301278 3.60299 73.0217 4.16034e-05 0.938685 0.184222 specstab: # 13 13 2062 min/mean/sig/max -0.105437 0.106076 1.19633 21.7508 -5.22044e-06 0.237103 0.140143 Traceback (most recent call last): File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in f = aplpy.FITSFigure(fitsfile) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper return f(*args, **kwargs) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__ self._get_hdu(data, hdu, north, convention=convention, File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu raise IOError("File not found: " + filename) OSError: File not found: R-Cas_94051.mom0.fits Traceback (most recent call last): File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in f = aplpy.FITSFigure(fitsfile) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper return f(*args, **kwargs) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__ self._get_hdu(data, hdu, north, convention=convention, File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu raise IOError("File not found: " + filename) OSError: File not found: R-Cas_94051.mom1.fits Traceback (most recent call last): File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in f = aplpy.FITSFigure(fitsfile) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper return f(*args, **kwargs) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__ self._get_hdu(data, hdu, north, convention=convention, File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu raise IOError("File not found: " + filename) OSError: File not found: R-Cas_94051.mom2.fits INFO: Auto-setting vmin to -2.333e+01 [aplpy.core] INFO: Auto-setting vmax to 2.202e+02 [aplpy.core] INFO: Auto-setting vmin to -2.333e+01 [aplpy.core] INFO: Auto-setting vmax to 2.202e+02 [aplpy.core] Writing R-Cas_94051.wt.png INFO: Auto-setting vmin to -1.945e+01 [aplpy.core] INFO: Auto-setting vmax to 2.159e+02 [aplpy.core] INFO: Auto-setting vmin to -1.945e+01 [aplpy.core] INFO: Auto-setting vmax to 2.159e+02 [aplpy.core] Writing R-Cas_94051.wt2.png INFO: Auto-setting vmin to -2.381e+01 [aplpy.core] INFO: Auto-setting vmax to 2.643e+02 [aplpy.core] INFO: Auto-setting vmin to -2.381e+01 [aplpy.core] INFO: Auto-setting vmax to 2.643e+02 [aplpy.core] Writing R-Cas_94051.wt3.png Traceback (most recent call last): File "/lma1/teuben/lmtoy/examples/fitsplot.py", line 21, in f = aplpy.FITSFigure(fitsfile) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/decorators.py", line 28, in wrapper return f(*args, **kwargs) File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 232, in __init__ self._get_hdu(data, hdu, north, convention=convention, File "/lma1/teuben/lmtoy/anaconda3/lib/python3.8/site-packages/aplpy/core.py", line 309, in _get_hdu raise IOError("File not found: " + filename) OSError: File not found: R-Cas_94051.wtn.fits INFO: Auto-setting vmin to -6.455e+00 [aplpy.core] INFO: Auto-setting vmax to 7.165e+01 [aplpy.core] INFO: Auto-setting vmin to -6.455e+00 [aplpy.core] INFO: Auto-setting vmax to 7.165e+01 [aplpy.core] Writing R-Cas_94051.wtr.png WARNING: FITSFixedWarning: RADECSYS= 'FK5 ' / the RADECSYS keyword is deprecated, use RADESYSa. [astropy.wcs.wcs] INFO: Setting slices=[0] [aplpy.core] INFO: Auto-setting vmin to -1.963e+04 [aplpy.core] INFO: Auto-setting vmax to 1.974e+05 [aplpy.core] INFO: Auto-setting vmin to -1.963e+04 [aplpy.core] INFO: Auto-setting vmax to 1.974e+05 [aplpy.core] Writing R-Cas_94051.mom0.png LMTOY>> Created R-Cas_94051.nf.fits and R-Cas_94051.nfs.fits LMTOY>> ADMIT post-processing LMTOY>> lmtoy_admit: 31-oct-2021 /lma1/teuben/lmtoy/examples/lmtoy_admit.sh: line 33: export: `R-Cas_94051.nfs.fits': not a valid identifier No PDIR directory used, all work in the current directory ADMIT = /lma1/teuben/lmtoy/admit version = 1.0.8.5 CASA_PATH = /n/astromake/opt/casa/58 linux admit lma.astro.umd.edu CASA_ROOT = /n/astromake/opt/casa/58 prefix = /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7 version = 5.8.0-rel-109 revision = 1 Trying CASA6, no worries if this fails Traceback (most recent call last): File "", line 1, in ImportError: No module named casatools LMTOY>> ADMIT post-processing Found 33 Xvfb 1586828 Sl Xvfb 1586125 Sl Xvfb 1584150 Sl Xvfb 1583378 Sl Xvfb ### (1/1) : processing R-Cas_94051.nfs.fits R-Cas_94051.nfs.fits [27, 27, 2062] R-Cas 114.5613 -10.619 -0.0003259542 0.006 /lma1/teuben/lmtoy/admit/admit/test/admit1.py --basename x R-Cas_94051.nfs.fits 257.186u 7.098s 5:21.34 82.2% 0+0k 2392+385768io 0pf+0w Logfile: R-Cas_94051.nfs.fits.log LMTOY>> lmtoy_admit: 31-oct-2021 /lma1/teuben/lmtoy/examples/lmtoy_admit.sh: line 33: export: `R-Cas_94051.nf.fits': not a valid identifier No PDIR directory used, all work in the current directory ADMIT = /lma1/teuben/lmtoy/admit version = 1.0.8.5 CASA_PATH = /n/astromake/opt/casa/58 linux admit lma.astro.umd.edu CASA_ROOT = /n/astromake/opt/casa/58 prefix = /an/terra_astromake/opt/casa/casa-release-5.8.0-109.el7 version = 5.8.0-rel-109 revision = 1 Trying CASA6, no worries if this fails Traceback (most recent call last): File "", line 1, in ImportError: No module named casatools LMTOY>> ADMIT post-processing ### (1/1) : processing R-Cas_94051.nf.fits R-Cas_94051.nf.fits [27, 27, 2062] R-Cas 114.5613 -10.619 -0.0003259542 0.006 /lma1/teuben/lmtoy/admit/admit/test/admit1.py --basename x R-Cas_94051.nf.fits 67.360u 2.524s 1:21.48 85.7% 0+0k 864+70728io 0pf+0w Logfile: R-Cas_94051.nf.fits.log LMTOY>> Created R-Cas_94051.fits and R-Cas_94051.wt.fits LMTOY>> Parameter file used: lmtoy_94051.rc LMTOY>> Making summary index.html: Making index.html for obsnum=94051 R-Cas_94051 R-Cas_94051_specviews R-Cas_94051_specpoint Writing index.html Writing index_pipeline.html Writing index_admit.html Writing index_pars.html Writing index_log.html